PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149964.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 925aa MW: 101955 Da PI: 6.689

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAA+++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_027149964.1 603 AEKTITLQMLRQYFAGSLKDAARNIGVCPTTLKRICRQHGIKRWPSRKIKKV 654 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MNEYGNVSTQ NTISGAEGSD SLVDLDCMDE LLLEGCWLET TEGPELLSDS PSDFNALFDA 60 SFTWPILEAI NGESNPLKST EEERQRLSFS ENLSASPSQG RNSAKSESQD GNAVCSPSLS 120 GNFSAESSAL SRRLWIGPRA STSVMDRLIK ALGYMKDWAG DKNALIQIWV PVNKGGRRVL 180 TTNDQPFSLD LNCPRLASYR NVSVNYQFST EEDLKESVGL PGRVFMGRVP EWTPDVQFFR 240 TDEYPRVGHA QQYDVRGTLA VPIFEQGSRN CLGVIEVVLT TQKINYRPEL ESVCRALQAV 300 NLRSSDVSGA QNSKACDFSY QSALPEIQEI LRAACGTYSL PLAQTWVPCI KQGKGGCRHS 360 DENLVRCVST VDSACYIADS HVQGFSDACS EHHLLKGQGI VGRAFTTNQP CFSPDITTFT 420 KTDYPLSHHA RIFGLCAAVA IRLRSIYSGS TDFVLEFFLP VDCKDTEEHQ KMLSSLSLII 480 QKFCRGLRVI TDKELLEENS VPSGGVSIPS YIKFGEEMSK TEHRHSAMAS QRSFWTSRRA 540 EVEETAVVAS KIQNAKPAEM LSGKFSAARQ SLPDISMCGD SLTRGQCSLL DVSKTAEKRG 600 AKAEKTITLQ MLRQYFAGSL KDAARNIGVC PTTLKRICRQ HGIKRWPSRK IKKVGHSLQK 660 IQRVIDSVQG ASGSLQIESF YTNFPELASP NLTTAAPFSC FNSSDHPISL NTQPEASTLS 720 PRASASKSPS SSCSHSSSSS QCCSTGTQPH PHTLKISGQE DLVKNNSTGF MLKRVRSDAQ 780 LDLPSDGPKF LPRSHSHVSF TEHPDPENLP PAPKETSWMS REGTTLRIKV TYGEEKIRFR 840 MLNNWGYRDL LREVSGRFGV DDTTGFQLKY MDDDSEWILL TCDADLEECL DICRSSQSQT 900 VKLSFLCASH PLHGSPSGSR SCDIS

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MNEYGNVSTQ NTISGAEGSD SLVDLDCMDE LLLEGCWLET TEGPELLSDS PSDFNALFDA  60
SFTWPILEAI NGESNPLKST EEERQRLSFS ENLSASPSQG RNSAKSESQD GNAVCSPSLS  120
GNFSAESSAL SRRLWIGPRA STSVMDRLIK ALGYMKDWAG DKNALIQIWV PVNKGGRRVL  180
TTNDQPFSLD LNCPRLASYR NVSVNYQFST EEDLKESVGL PGRVFMGRVP EWTPDVQFFR  240
TDEYPRVGHA QQYDVRGTLA VPIFEQGSRN CLGVIEVVLT TQKINYRPEL ESVCRALQAV  300
NLRSSDVSGA QNSKACDFSY QSALPEIQEI LRAACGTYSL PLAQTWVPCI KQGKGGCRHS  360
DENLVRCVST VDSACYIADS HVQGFSDACS EHHLLKGQGI VGRAFTTNQP CFSPDITTFT  420
KTDYPLSHHA RIFGLCAAVA IRLRSIYSGS TDFVLEFFLP VDCKDTEEHQ KMLSSLSLII  480
QKFCRGLRVI TDKELLEENS VPSGGVSIPS YIKFGEEMSK TEHRHSAMAS QRSFWTSRRA  540
EVEETAVVAS KIQNAKPAEM LSGKFSAARQ SLPDISMCGD SLTRGQCSLL DVSKTAEKRG  600
AKAEKTITLQ MLRQYFAGSL KDAARNIGVC PTTLKRICRQ HGIKRWPSRK IKKVGHSLQK  660
IQRVIDSVQG ASGSLQIESF YTNFPELASP NLTTAAPFSC FNSSDHPISL NTQPEASTLS  720
PRASASKSPS SSCSHSSSSS QCCSTGTQPH PHTLKISGQE DLVKNNSTGF MLKRVRSDAQ  780
LDLPSDGPKF LPRSHSHVSF TEHPDPENLP PAPKETSWMS REGTTLRIKV TYGEEKIRFR  840
MLNNWGYRDL LREVSGRFGV DDTTGFQLKY MDDDSEWILL TCDADLEECL DICRSSQSQT  900
VKLSFLCASH PLHGSPSGSR SCDIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein