PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027149849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | DBB | ||||||||
Protein Properties | Length: 357aa MW: 38389.9 Da PI: 6.963 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.2e-07 | 4 | 45 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +++ e++ fC ++ lC++C H+ H++ XP_027149849.1 4 QCDVCDKGEASVFCVADEAALCNTCDHRVHHAnklaskhHRF 45 7******88********************6445888886666 PP | |||||||
2 | zf-B_box | 26.1 | 1.8e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++e ++ lfC++++ lC++C +Hk Ht XP_027149849.1 54 QAPLCDICQERRAFLFCQQDRAILCRECDIPIHKAneHT 92 7899*****************************878865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence |
MKIQCDVCDK GEASVFCVAD EAALCNTCDH RVHHANKLAS KHHRFSLLQP PPKQAPLCDI 60 CQERRAFLFC QQDRAILCRE CDIPIHKANE HTEKHNRFLL TGVKLSANSA LYAPSEAAAA 120 ISASSSLTNV SDAVPTFNPQ STVINKPVSI SRENVLQFNP TPRTNASKAT STTSASANTV 180 TAAAATNEKG TTTTTTTAMN GQTMNGLDTN NSSTPTSSIA EYLIEMLPGW HVEDFLDSSS 240 PFGFCKSTGD GEMIPFWDEG LHSDLSSFLP ENTGLWVPQA APVPLHAHPT TQPQCFSTSS 300 ASNVGFGFGF GGHIGSKDMI SNIKSSRKRN DDNSFAVPQI SPPSSASSKR LKTTTLW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 327 | 352 | RKRNDDNSFAVPQISPPSSASSKRLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 7e-56 | DBB family protein |