PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027149741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 51741.1 Da PI: 5.606 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 164 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H XP_027149741.1 164 YICSVCGRKCKTHLDLKKHFRQlH 187 89*****************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence |
MINSLCTSIE FIHLNSPPFS HYRFPKPLFL IPQFAPQKPP KPLSLSDPNS SGKWANIRAC 60 AAAAAAAESE IDMVRTKEGI YTAKPKKVVV LWDLDNKPPR GPPYQAAMAL KKVAQHFGDL 120 VDISAYANRH AFIHLPQWVV EERREQRRMD ILERKGVSTP SEPYICSVCG RKCKTHLDLK 180 KHFRQLHERE RQKKLNRMRS LKGKKRQRFK ERFIDGNEKY NEAARTLTSP KVGYGLASEL 240 SRAGVFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLLLVS DDSDFSEMLR RARAANLGTV 300 VIGDGYRALG RQADLWVPWN DVENGEIKED DLVSRIKRRR ESGGRRTGRF SVSEFDGGLN 360 GEGSVDSLMD QLVGTTEFDG MRISAFSEGE EEEDEDREEE QDWLRENQRG YVQIGLKNSI 420 DDEEDPDEYT EEEDYVLDSE EEGVEEDGLQ FW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-149 | C2H2 family protein |