PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149685.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 513aa MW: 57332.6 Da PI: 5.3786

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.9e-21	142	238	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++ v++Li+++ +++e+ ++ kk++W+ vsk+++++g+ +sp+qC++k+++lnkrykk++++ +++ +++++++ +++++ XP_027149685.1 142 KWTDNIVRLLIQVVANVGEDGPSEGaegarrksgiIKKGKWRTVSKVLMSKGLCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPALLNN 236 7************988888754335556677779*****************************************669********9 PP trihelix 85 le 86 +e XP_027149685.1 237 ME 238 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MNNNNPGSGF LSGYTGGFLG MNRNQQNPGG LLGMSRSHQQ NLSSSNPARL QNDQVPSPMN 60 MISVAEKDSR IGLREVKDSA PRGFAMTFAR ERVAGPRNVM SNGAVNINEI SSDEDDPSMA 120 EGNGRDTGGG KGKKDAPWVR MKWTDNIVRL LIQVVANVGE DGPSEGAEGA RRKSGIIKKG 180 KWRTVSKVLM SKGLCVSPQQ CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PALLNNMEHL 240 SDKAKEDVRK LLGSKHLFYK EMCAYHNGQK ITDCNDFELP VHAASVAEQI WEHCDGSPVV 300 GEGTKDKDGS PVAGEGTTDK DGSPVAAQSS KDNDISEGDD ADENDESDHY MSEDEAADNN 360 NSGSVDRVET SENREVWKDY GNTRSRSGAG DDFQAEIAEM FSDPTKSQWE RREWIRKRML 420 QLHEERIGIQ AEAFELEKQR LKWQRFCNKK ELELETARLE KERLIIENER KALQLKQKEV 480 EVEFRRPEST FNLTSFSIDI MGGREQIDSG RQH

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MNNNNPGSGF LSGYTGGFLG MNRNQQNPGG LLGMSRSHQQ NLSSSNPARL QNDQVPSPMN  60
MISVAEKDSR IGLREVKDSA PRGFAMTFAR ERVAGPRNVM SNGAVNINEI SSDEDDPSMA  120
EGNGRDTGGG KGKKDAPWVR MKWTDNIVRL LIQVVANVGE DGPSEGAEGA RRKSGIIKKG  180
KWRTVSKVLM SKGLCVSPQQ CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PALLNNMEHL  240
SDKAKEDVRK LLGSKHLFYK EMCAYHNGQK ITDCNDFELP VHAASVAEQI WEHCDGSPVV  300
GEGTKDKDGS PVAGEGTTDK DGSPVAAQSS KDNDISEGDD ADENDESDHY MSEDEAADNN  360
NSGSVDRVET SENREVWKDY GNTRSRSGAG DDFQAEIAEM FSDPTKSQWE RREWIRKRML  420
QLHEERIGIQ AEAFELEKQR LKWQRFCNKK ELELETARLE KERLIIENER KALQLKQKEV  480
EVEFRRPEST FNLTSFSIDI MGGREQIDSG RQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-58	Trihelix family protein