PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149240.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 447aa MW: 49947.2 Da PI: 9.6249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	214	236	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H XP_027149240.1 214 SCPECGEIFMKAENLELHQAVrH 236 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MAKSRNTRKQ TKENKKEINR KRSPEQKEKP HSWAVVRSLF TCKHLQAQMQ QQQLQKAEQQ 60 QQKKNSEEKK QQKEEQGKQE KQMPDMEENH KKCKKIKCSG SLCSNTKVMH RPEPVSPEDL 120 KKRASSSMGG SFNTENVSCR SIKVTLNDLN GAVVSASSSS SSMSAASTTN SPLITGSFRG 180 MPFRKFSSCY ECRMVVDPVL GMTRDPSLRS TICSCPECGE IFMKAENLEL HQAVRHAVSE 240 LGPEDTSKNI VEIIFQSSWL KKQTPVCKID RILKVHNTSK TVSRFEEYRD SIKDKATKHT 300 KKHPRCIADG NELLRFHCTT FMCSLGLNGS SNLCNSIPNC NVCSIIKNGF KVTGEFSLAG 360 EVTGKAILTT ATSGKAHDNA RVVLEDDKRA MLVCRVIAGR VKRNLEGSLE EYDSVAGAAG 420 VYSNLDELYV FNPKAILPCF VVIYRGF

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MAKSRNTRKQ TKENKKEINR KRSPEQKEKP HSWAVVRSLF TCKHLQAQMQ QQQLQKAEQQ  60
QQKKNSEEKK QQKEEQGKQE KQMPDMEENH KKCKKIKCSG SLCSNTKVMH RPEPVSPEDL  120
KKRASSSMGG SFNTENVSCR SIKVTLNDLN GAVVSASSSS SSMSAASTTN SPLITGSFRG  180
MPFRKFSSCY ECRMVVDPVL GMTRDPSLRS TICSCPECGE IFMKAENLEL HQAVRHAVSE  240
LGPEDTSKNI VEIIFQSSWL KKQTPVCKID RILKVHNTSK TVSRFEEYRD SIKDKATKHT  300
KKHPRCIADG NELLRFHCTT FMCSLGLNGS SNLCNSIPNC NVCSIIKNGF KVTGEFSLAG  360
EVTGKAILTT ATSGKAHDNA RVVLEDDKRA MLVCRVIAGR VKRNLEGSLE EYDSVAGAAG  420
VYSNLDELYV FNPKAILPCF VVIYRGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-104	C2H2 family protein