PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27002.3 Da PI: 6.1734 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87 | 2.7e-27 | 70 | 158 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YAk+vGF vr+ + ++s+++g++ r++ C+k+g++ +++ + + +r+r + r gCka++ vk+ek+gkw+vt+++++HnH+l XP_027148779.1 70 KFYIDYAKKVGFVVRIMQRRRSETDGRTLARRLGCNKQGFSPNNQGSVASGKRPRCSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 158 6**************************************************************************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MDLDKEDRNR EEENNSEGKE GEDVVGEGNA EELDANDVMD VDGNTGQLKD SEVLEPYVGM 60 EFESEDAARK FYIDYAKKVG FVVRIMQRRR SETDGRTLAR RLGCNKQGFS PNNQGSVASG 120 KRPRCSAREG CKATILVKME KSGKWVVTRF VKDHNHPLII SARGVSNGVR FLPNVDKDKK 180 IEQLTLELQR QDQLCTAYRN KLLNFLASVE EQGEHLSSKI NGVIENVKKI EAEIQKSSGH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 4e-71 | FAR1 family protein |