PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 428aa MW: 46820.2 Da PI: 9.3009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 191 | 213 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ + H XP_027148620.1 191 ACSECGEVFPKIESLEHHQAVrH 213 6******************9888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence |
MNERGPSSLP QLRLCFVALL FMALLTSLPE PRKTPSEKTS HNNKKHPSKR RKKQQPQKPP 60 SSWDQFKNLL TCKQIEGSKV HDPSIPKLGS CSSICSFRDV VYGNTSRVVH RADNSPESSS 120 VGQETRLLSK KSSHGSSSRS FSSSLRSNGT SVTYNNGSCR GMQFRKLSGC YECHTIVDPS 180 RYPLPRTTIC ACSECGEVFP KIESLEHHQA VRHAVGELGP EDSSRNIVEI IFKSSWLKKD 240 NPICSIERIL KVHNTQRTIQ RFEDCRDAVK IRANSNSKKN PRCAADGNEL LRFHCTSLTC 300 SLGARGSSSL CGLVPGCGVC TIIRHGFQGN KSSGVRTTAS SGRAHDCLGL GSDGGRRAML 360 VCRVIAGRVK RMADDAAVEE DDAGTLAAGS YDSVAGYAGV YSNLEELYVF NPRAILPCFV 420 VIYKALES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-157 | C2H2 family protein |