PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027148466.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 684aa MW: 75218.8 Da PI: 6.9457

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027148466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	3e-30	79	163	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdqlea XP_027148466.1 79 RWPRQETLALLKIRSEMDVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVFKYHKRTKEGRASK--ADGKTYRFFDQLEA 163 8******************************************************************96..66678*****85 PP
2	trihelix	103	2.2e-32	491	576	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_027148466.1 491 RWPKAEVQALIRMRTNLDVKYQENGPKGPLWEEISSGMRKLGYNRNSKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLDA 576 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MMLGTSSSSA GGLIGGNSAE AGAAGATGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF 60 SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG 120 YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ 180 PPTAAAAAMA VPMQAAASNP PISSHGTVSS APLSPNPVSF AQNFLPQNVT SNAIPTIPSL 240 PPSQSQHLHP PPPTTNAANP PPPPPHHHHH HHPSNTSFPH HPSLSTSMLS NSSSSSTSSD 300 EDIGRRHLRK RKWKDFFERL MKNVIDKQEE LQKKFLDTLE KRERDRMIRE EAWRVQEMAR 360 INREHDLLVQ ERSMAAAKDA AVIAFLQKIT EQQNPNNPNT TPIRLPAQLQ LPETTRIPPP 420 APPPMVPPSM SVSVPQATPV TPIPPPAAAA AVAPQPPTQA TMGAAPTRNL ESSPNKTDNG 480 IQNFMQPSSS RWPKAEVQAL IRMRTNLDVK YQENGPKGPL WEEISSGMRK LGYNRNSKRC 540 KEKWENINKY FKKVKESSKK RPEDSKTCPY FHQLDALYRE KAKGETTSFA SGYPNVKPEN 600 PMVPIMARPE QQWPLQQDQQ QQQQQQQQQQ QQQPDSAMED HGSDNMDEND HDEDDGDEDE 660 DEDEGAGYEI VTNKQASSVA TTVE

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MMLGTSSSSA GGLIGGNSAE AGAAGATGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF  60
SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG  120
YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ  180
PPTAAAAAMA VPMQAAASNP PISSHGTVSS APLSPNPVSF AQNFLPQNVT SNAIPTIPSL  240
PPSQSQHLHP PPPTTNAANP PPPPPHHHHH HHPSNTSFPH HPSLSTSMLS NSSSSSTSSD  300
EDIGRRHLRK RKWKDFFERL MKNVIDKQEE LQKKFLDTLE KRERDRMIRE EAWRVQEMAR  360
INREHDLLVQ ERSMAAAKDA AVIAFLQKIT EQQNPNNPNT TPIRLPAQLQ LPETTRIPPP  420
APPPMVPPSM SVSVPQATPV TPIPPPAAAA AVAPQPPTQA TMGAAPTRNL ESSPNKTDNG  480
IQNFMQPSSS RWPKAEVQAL IRMRTNLDVK YQENGPKGPL WEEISSGMRK LGYNRNSKRC  540
KEKWENINKY FKKVKESSKK RPEDSKTCPY FHQLDALYRE KAKGETTSFA SGYPNVKPEN  600
PMVPIMARPE QQWPLQQDQQ QQQQQQQQQQ QQQPDSAMED HGSDNMDEND HDEDDGDEDE  660
DEDEGAGYEI VTNKQASSVA TTVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-49	Trihelix family protein