PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027148449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 367aa MW: 40413.3 Da PI: 8.3777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 81 | 129 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r +lg+fgta eAa a+++a++ ++g XP_027148449.1 81 YRGVRQRT-WGKWVAEIREPKK---GSRLWLGTFGTAIEAALAYDKAARVMYG 129 9****999.**********954...4**********************99887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence |
MSPLKPASDE TSLTLGPFGR KNSKRRSDAS KHVAETLNKW KEYFDKIESI NGKLVRKAPG 60 RGSKKGCMKG KGGPENSRHN YRGVRQRTWG KWVAEIREPK KGSRLWLGTF GTAIEAALAY 120 DKAARVMYGP SAQLNLPNYN VVKEASTEPS LELTMSIPES TLTTSHAEFA KAEDSKVTSE 180 TSYHSASVPS KAGKEEMVTS FPEHGEKGSS SPLLSSVESQ VVHENSKSSC NDEASQHVID 240 SPTERKEVTD KSGPMDEGCK TMYEENSENS TKECIIPRGL EKSDSNYECV EEMPLAEWFA 300 EIRNRNMRDR LPLGTVGTAR SINGASSWLK LSNDCSKVST RESFLVPTVL ASNCKTTSKC 360 KNESPEV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-36 | ERF family protein |