PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024996993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 429aa MW: 48127.3 Da PI: 6.7942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.7e-12 | 253 | 297 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P +K++Ka+ L A+ YI +L XP_024996993.1 253 HVEAERQRREKLNHRFYALRSVVPYV-----TKMDKASLLADATTYIDEL 297 889**********************8.....8***************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence |
MSQASLQTRL KFILQSRPER WLYAIFWQAS KEIDGRLVLL WGDGYFPGTN SDLPDSRRNG 60 HGHLMLSYDD DVSDSQWLIM SSVEMCFPAG HDVVGRSFSS GSHLWLAGDV ELKKYKSKRA 120 EQVRAHGIKS LVCIPTSNGV VELGSCDTAK EDVGLIQLTK SIFEPDSFFN INLAQIVDEC 180 EIPNRGIWNQ VREEGQEEVT LKKMNMSSSN SDPFDLDSSS PSTTNITSLP KKRGRRAKGA 240 TAQPAEVMPP GYHVEAERQR REKLNHRFYA LRSVVPYVTK MDKASLLADA TTYIDELKAR 300 IQTLEKKVGS XSSQIKPPQN EIQMNSNYYD YNPIQNSRTV SSNPAANRFE VDVKILGSEA 360 MIRVQSPDMD HPAARLMDAL RSLDLRVHYA SVSSVKDLML QDVIVKVPDG FTTGEETLRV 420 AVLKNMCLD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-56 | bHLH family protein |