PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996983.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 339aa MW: 37529.2 Da PI: 8.1706

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	162	216	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_024996983.1 162 RKKLRLSKDQAAVLEETFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRARTK 216 788899***********************************************98 PP
2	HD-ZIP_I/II	127.6	5.4e-41	162	251	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l XP_024996983.1 162 RKKLRLSKDQAAVLEETFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKEVNELR-AL 251 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGEKDDGLGL SLSLKCPENY PPPPPPPVDA SSSGVTRFPL NLLPSPPLSF VQQRHHHVSN 60 HQKLSFMINH ALPPALPPPD LNAETRSYAR GIDVNRPPST SALVALTAER DDEALVSSPN 120 STVSSVSGKR IEREENEAER ESSSHGISGE EEEEGGDASA ARKKLRLSKD QAAVLEETFK 180 EHNTLNPKQK LALAKQLDLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CDTLTEENRR 240 LQKEVNELRA LKLSPQFYMN MNPPTTLTMC PQCERVAVSS SSSSSSAAAA TSSALGSTSL 300 PKALHHGSMT TNHQKQNNPF LPRATIIPHR PLDTHHPRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	219	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-65	HD-ZIP family protein