PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996980.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 353aa MW: 40880.4 Da PI: 6.1917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nratk g+Wkatg+dk++ XP_024996980.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcNLGTeEQNEWYFFSHKDKKYPTGTRTNRATKVGFWKATGRDKAI 100 69**************************.9***********954533332566******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k++lvg++ktLvfykgrap+g+k+dW+mheyrle XP_024996980.1 101 YS-KHNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .899*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCNLGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATKVGF WKATGRDKAI YSKHNLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN AMTQEEGWVV CRVFKKRITT VRRMDEHDAL SWYDDQVSFM 180 PDYESPNRIS HPYTANNSYQ HQLPGKSELD QMHYNLPHEH SFLQLPQLES LRFPQSAAAS 240 VSASYGSAFQ PSIQQSNINL LYGDNNNNNH NNNNNGEQDL QVTDWRVLDK FVASQLSNDQ 300 DAVTKENTYL NPPSSSLQMA EHMNMLLSDS KSDEIASEGA SISTSTCQID LWK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCNLGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATKVGF WKATGRDKAI YSKHNLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN AMTQEEGWVV CRVFKKRITT VRRMDEHDAL SWYDDQVSFM  180
PDYESPNRIS HPYTANNSYQ HQLPGKSELD QMHYNLPHEH SFLQLPQLES LRFPQSAAAS  240
VSASYGSAFQ PSIQQSNINL LYGDNNNNNH NNNNNGEQDL QVTDWRVLDK FVASQLSNDQ  300
DAVTKENTYL NPPSSSLQMA EHMNMLLSDS KSDEIASEGA SISTSTCQID LWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-136	NAC family protein