PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996967.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 320aa    MW: 36531.9 Da    PI: 5.885
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-5361331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+ +yLk+kveg k+el evi+ +++yk++Pw+Lp k  + +++ ewyfF++rd+ky++g+r+nrat++gyWkatgkd++v+
  XP_024996967.1   6 LPPGFRFHPTDEELIGYYLKRKVEGLKIEL-EVIPVIELYKFDPWELPdKsFLPKRDMEWYFFVPRDRKYPNGSRTNRATNAGYWKATGKDRKVM 99 
                     79****************************.99**************96434556788************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++l g +ktLvfy+grap g +tdWvmheyrl
  XP_024996967.1 100 C-QSSLAGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                     *.999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGGASLPPGF RFHPTDEELI GYYLKRKVEG LKIELEVIPV IELYKFDPWE LPDKSFLPKR  60
DMEWYFFVPR DRKYPNGSRT NRATNAGYWK ATGKDRKVMC QSSLAGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDVSGG TPSFQGPFAL CRVTKKNELK TSYVTRETKA KEVGSGYNGD  180
INESVVIRTS VRMGEESNLS SPLTSYEKTS TFSDEPTSST GLNNPSSFWV SPDLILDSSK  240
EQSKVPEGSF GCFTPNKIPN PTSPWQPYHQ FEISPSSSYS NFTEEVEPID DLSRFGYMSP  300
YSGNESFTRI FENKDFPYEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-104NAC family protein