PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024996964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 22347.8 Da PI: 6.5336 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 14 | 67 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R +f++eq++ Le +Fe ++ p +++++LA+klgL rqV +WFqNrRa+ k XP_024996964.1 14 GRSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSK 67 599*************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 104.6 | 8.1e-34 | 15 | 103 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + r+s+eq+++LE +Fe++++ e + K++la++Lgl+prqva+WFqnrRAR k++q+E++y+ Lk+ y+al+ + e+L++e+++L +++ XP_024996964.1 15 RSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSKSRQTEQEYNLLKHDYEALACKSESLKEENQSLLTQM 103 679*********************************************************************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MMSAVKTRKN KDEGRSRFSN EQIQFLEYMF ETQSRPELRT KQQLANKLGL HPRQVAIWFQ 60 NRRARSKSRQ TEQEYNLLKH DYEALACKSE SLKEENQSLL TQMLRDLAKT QQGNITMRPD 120 FANKSSNENF DDKITLSMAD NSKVLSENDN QEIHVPFYGD TSYVGEDGKI IETEEHKSRS 180 DSDRPSWWEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-31 | HD-ZIP family protein |