PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996963.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 22589.1 Da PI: 6.5336

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.2e-21	14	67	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R +f++eq++ Le +Fe ++ p +++++LA+klgL rqV +WFqNrRa+ k XP_024996963.1 14 GRSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSK 67 599*************************************************99 PP
2	HD-ZIP_I/II	105.5	4e-34	15	105	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + r+s+eq+++LE +Fe++++ e + K++la++Lgl+prqva+WFqnrRAR k++q+E++y+ Lk+ y+al+ + e+L++e+++L ++l+ XP_024996963.1 15 RSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSKSRQTEQEYNLLKHDYEALACKSESLKEENQSLLTQLQM 105 679**********************************************************************************999975 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MMSAVKTRKN KDEGRSRFSN EQIQFLEYMF ETQSRPELRT KQQLANKLGL HPRQVAIWFQ 60 NRRARSKSRQ TEQEYNLLKH DYEALACKSE SLKEENQSLL TQLQMLRDLA KTQQGNITMR 120 PDFANKSSNE NFDDKITLSM ADNSKVLSEN DNQEIHVPFY GDTSYVGEDG KIIETEEHKS 180 RSDSDRPSWW EF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-32	HD-ZIP family protein