PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996922.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 479aa MW: 51816.8 Da PI: 9.2027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.9	1.2e-15	299	344	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P+a K +Ka++L +++eY+k+Lq XP_024996922.1 299 HNQSERKRRDKINQKMKTLQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 344 9**********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MSHCVPSWDT LDDYPDRNPN PGYRKPDLRA SSNSMSSHLD APILDYAVAE LTWKNGQLAM 60 HGLGPPRVVN KPHATAATLT KYTWDKPRAA ETLESIVNQA TLPPNHKPQM HIYGAGDLVP 120 WLDHQSSATA AGSFSASVTM TMDALVPSSN AQPPAASLRS GVGAGRCSTR VASCSGDQSG 180 FVDQRIRGGG GGTAAATATH EWSSCRDQSA SGSANFGMES SRQLTVETCE RELGVKGFTS 240 TSMGSPENTT SGKRSTKSTS PDEQDSVCHS KPQSNMEEKK KGKGKSSIST KRSRAAAIHN 300 QSERKRRDKI NQKMKTLQKL VPNANKTDKA SMLDEVIEYL KQLQAQIHMM SRMNMSPMMM 360 PLAMQQQQQI QMAMMNPMGM GIGMGIGMGM PGVMDLNAIG GNRSNIPGIP PVFHPATFMQ 420 TPMASWDMHT GGDRVTNPND PMAAFLACQS QPMTMDAYSK MVALFQHMQN QPCYTGLKN

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MSHCVPSWDT LDDYPDRNPN PGYRKPDLRA SSNSMSSHLD APILDYAVAE LTWKNGQLAM  60
HGLGPPRVVN KPHATAATLT KYTWDKPRAA ETLESIVNQA TLPPNHKPQM HIYGAGDLVP  120
WLDHQSSATA AGSFSASVTM TMDALVPSSN AQPPAASLRS GVGAGRCSTR VASCSGDQSG  180
FVDQRIRGGG GGTAAATATH EWSSCRDQSA SGSANFGMES SRQLTVETCE RELGVKGFTS  240
TSMGSPENTT SGKRSTKSTS PDEQDSVCHS KPQSNMEEKK KGKGKSSIST KRSRAAAIHN  300
QSERKRRDKI NQKMKTLQKL VPNANKTDKA SMLDEVIEYL KQLQAQIHMM SRMNMSPMMM  360
PLAMQQQQQI QMAMMNPMGM GIGMGIGMGM PGVMDLNAIG GNRSNIPGIP PVFHPATFMQ  420
TPMASWDMHT GGDRVTNPND PMAAFLACQS QPMTMDAYSK MVALFQHMQN QPCYTGLKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	ERKRRD
2	304	309	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-80	bHLH family protein