PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996797.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 385aa MW: 42237.8 Da PI: 7.8568

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.6	1.1e-23	134	177	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCs++v +++k+CErH h+ r rsrk++e XP_024996797.1 134 DPEPWRCRRTDGKKWRCSKDVAPDQKYCERHAHKTRPRSRKPVE 177 79***************************************987 PP
2	QLQ	54	5e-19	84	116	3	35
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FTa+Q+q+L++Q +++Ky++a+ PvPp+Ll+++ XP_024996797.1 84 FTATQWQELERQTMIFKYMMASIPVPPQLLLPL 116 *******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MSGSGGDVQS PTPLECDVGL GLNTEPAYPY KKTSFMSHHQ NRHYHHPQAS EYAGVYSNTN 60 RIASGFPFKS TTVGVMAASG KLLFTATQWQ ELERQTMIFK YMMASIPVPP QLLLPLSTQS 120 NRGGMGLKFS NGSDPEPWRC RRTDGKKWRC SKDVAPDQKY CERHAHKTRP RSRKPVEIQP 180 HNNKEDYHPL LLSSHVNNIK NYKNPSDWFM RNGTIPVSKS ESDQIFKPDF KGNFQHKSYL 240 DHNLNTSGTS TAASDAAAGA RRQDFIDSWS GIGNGDDCSL SLSMQSGGNG MKFEDDESFQ 300 MGVGMLDGDT GGCGDVFRSH HHQWLNQPSW AGSTPGGPLG EVLCLGIAST TNMAPNVPSP 360 HGYSNNTTTS SSCEGGDVQG HGFNR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MSGSGGDVQS PTPLECDVGL GLNTEPAYPY KKTSFMSHHQ NRHYHHPQAS EYAGVYSNTN  60
RIASGFPFKS TTVGVMAASG KLLFTATQWQ ELERQTMIFK YMMASIPVPP QLLLPLSTQS  120
NRGGMGLKFS NGSDPEPWRC RRTDGKKWRC SKDVAPDQKY CERHAHKTRP RSRKPVEIQP  180
HNNKEDYHPL LLSSHVNNIK NYKNPSDWFM RNGTIPVSKS ESDQIFKPDF KGNFQHKSYL  240
DHNLNTSGTS TAASDAAAGA RRQDFIDSWS GIGNGDDCSL SLSMQSGGNG MKFEDDESFQ  300
MGVGMLDGDT GGCGDVFRSH HHQWLNQPSW AGSTPGGPLG EVLCLGIAST TNMAPNVPSP  360
HGYSNNTTTS SSCEGGDVQG HGFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-31	GRF family protein