PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996796.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 389aa MW: 42570.1 Da PI: 7.8568

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.6	1.1e-23	138	181	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCs++v +++k+CErH h+ r rsrk++e XP_024996796.1 138 DPEPWRCRRTDGKKWRCSKDVAPDQKYCERHAHKTRPRSRKPVE 181 79***************************************987 PP
2	QLQ	54	5e-19	88	120	3	35
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FTa+Q+q+L++Q +++Ky++a+ PvPp+Ll+++ XP_024996796.1 88 FTATQWQELERQTMIFKYMMASIPVPPQLLLPL 120 *******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSGSGGDVQS PTPLECDVGL GLNTEPAYPY KKTSFMSHHQ NRHYHHPQAS EYAGVYSNTN 60 RIASGFPFKS TTGSSTVGVM AASGKLLFTA TQWQELERQT MIFKYMMASI PVPPQLLLPL 120 STQSNRGGMG LKFSNGSDPE PWRCRRTDGK KWRCSKDVAP DQKYCERHAH KTRPRSRKPV 180 EIQPHNNKED YHPLLLSSHV NNIKNYKNPS DWFMRNGTIP VSKSESDQIF KPDFKGNFQH 240 KSYLDHNLNT SGTSTAASDA AAGARRQDFI DSWSGIGNGD DCSLSLSMQS GGNGMKFEDD 300 ESFQMGVGML DGDTGGCGDV FRSHHHQWLN QPSWAGSTPG GPLGEVLCLG IASTTNMAPN 360 VPSPHGYSNN TTTSSSCEGG DVQGHGFNR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSGSGGDVQS PTPLECDVGL GLNTEPAYPY KKTSFMSHHQ NRHYHHPQAS EYAGVYSNTN  60
RIASGFPFKS TTGSSTVGVM AASGKLLFTA TQWQELERQT MIFKYMMASI PVPPQLLLPL  120
STQSNRGGMG LKFSNGSDPE PWRCRRTDGK KWRCSKDVAP DQKYCERHAH KTRPRSRKPV  180
EIQPHNNKED YHPLLLSSHV NNIKNYKNPS DWFMRNGTIP VSKSESDQIF KPDFKGNFQH  240
KSYLDHNLNT SGTSTAASDA AAGARRQDFI DSWSGIGNGD DCSLSLSMQS GGNGMKFEDD  300
ESFQMGVGML DGDTGGCGDV FRSHHHQWLN QPSWAGSTPG GPLGEVLCLG IASTTNMAPN  360
VPSPHGYSNN TTTSSSCEGG DVQGHGFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-31	GRF family protein