PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996779.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 657aa MW: 76155.9 Da PI: 8.2986

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.7	3.7e-08	6	47	50	90
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ r+++ + +gC+a++k++++k ++ +e+++l++ HnH+l+ XP_024996779.1 6 RRYRNTNLKPCGCNACIKIHLTKdRACYEIYELVEAHNHALF 47 56789999************98999***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MHAGERRYRN TNLKPCGCNA CIKIHLTKDR ACYEIYELVE AHNHALFDIN NRCFSRKNRQ 60 IKYTDFKTLL NSSSYKVGAR RAHRIQTALN GGFEHTRVSE IDFKNFKRDV VACVGNKDAK 120 MLINKLSNRR DIVPGFFSEY KCNEQELSAI FWADEVVRIN YKEFGDVISF DGTFCTNKHA 180 MIFVPFLAVD NHKASVVVGS ALISGETIDN FSWVLKAFLK CHDKQPLFVI TDQCSAMKQA 240 IPMVFTEAKH RLFSAALNHD PNFNKVINKL VWNIHIGPTE FETRWHEMID QYNLGGDTWF 300 TEMYEIRHSW IPAYYKDMPM SGLMKTTSRY ESSNSYINIY ESYWFDLVQF LNNYDVAIEK 360 QRYRQSVHET VTRTTNPKFV TSSRLESHAS CIYSRNVFFD IQKEIKKTIW FCTIETVECR 420 DDLKSFVISH KTKKSSNNIT YQVCRNYSTN TVECDCNLFT RNRYLCRHAF KVLINDEVEC 480 ILEKYILRRW KRQLVPVQIQ SARVRYGEVD AEKDKCILDV YSKVDDIVNI THNDKSILAR 540 LGCNLDIFMG DIEKEVSYED PSQQKLDAIR DHLDVSITDE VDILPPSGIR NKGCGTGNRL 600 RPQSHFPLSP PKKVSICRIS ITPQSIELHG TATWFGSVPG PFLHIFYQPH VPLSSDA

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MHAGERRYRN TNLKPCGCNA CIKIHLTKDR ACYEIYELVE AHNHALFDIN NRCFSRKNRQ  60
IKYTDFKTLL NSSSYKVGAR RAHRIQTALN GGFEHTRVSE IDFKNFKRDV VACVGNKDAK  120
MLINKLSNRR DIVPGFFSEY KCNEQELSAI FWADEVVRIN YKEFGDVISF DGTFCTNKHA  180
MIFVPFLAVD NHKASVVVGS ALISGETIDN FSWVLKAFLK CHDKQPLFVI TDQCSAMKQA  240
IPMVFTEAKH RLFSAALNHD PNFNKVINKL VWNIHIGPTE FETRWHEMID QYNLGGDTWF  300
TEMYEIRHSW IPAYYKDMPM SGLMKTTSRY ESSNSYINIY ESYWFDLVQF LNNYDVAIEK  360
QRYRQSVHET VTRTTNPKFV TSSRLESHAS CIYSRNVFFD IQKEIKKTIW FCTIETVECR  420
DDLKSFVISH KTKKSSNNIT YQVCRNYSTN TVECDCNLFT RNRYLCRHAF KVLINDEVEC  480
ILEKYILRRW KRQLVPVQIQ SARVRYGEVD AEKDKCILDV YSKVDDIVNI THNDKSILAR  540
LGCNLDIFMG DIEKEVSYED PSQQKLDAIR DHLDVSITDE VDILPPSGIR NKGCGTGNRL  600
RPQSHFPLSP PKKVSICRIS ITPQSIELHG TATWFGSVPG PFLHIFYQPH VPLSSDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-47	FAR1 family protein