PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996765.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33697.8 Da    PI: 8.3947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18140194256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_024996765.1 140 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 194
                     788899***********************************************98 PP
2HD-ZIP_I/II1284e-41140229191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_024996765.1 140 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKELQELR-AL 229
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MMVENQDLGL SLSLNFPAAA ERNPSSLQLN LMPALVSSQS SFNVLHRTPN WTDSCPSSSD  60
RNNADAFRVE TRSFLKGIDV NRLPPTTAEA EDEAGVSSPN STISSISGKR SERDLPVNEH  120
DGERTSSRGL SDDEDGDNSR KKLRLSKDQS AVLEESFKEH NTLNPKQKLA LAKRLGLRPR  180
QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KELQELRALK LSPQFYMQMA  240
PPTTLTMCPS CERVAAPPPS SAMDKAADHQ HNRPHRMLPF NPWSTPTAHQ QMNGVHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145SRKKLRL
2189197RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-111HD-ZIP family protein