PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996760.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 586aa MW: 65608 Da PI: 6.5295

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	428	474	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_024996760.1 428 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 474 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MGDDNWNDEE KAIVASVLGT RAFDYLISSS LGNECSLTSL ENHDNLQSKL SDLVDNPNSD 60 SFSWNYAIFW QISRSKSGDL VLVWGDGSCR EPREGEEFEI ARILSIRLED ENQQRMRKRV 120 LQKLHVLFGG LDEDNYAFGL DRVTDTEMFF LISMYFSFPQ GEGGPGKCFL SGKHLWYSDA 180 LKSTYDYCFR SNLSKSAGIQ TVVLVPTDVG VVELGSIRSI PESMELLHSI RSSFSSKPRD 240 ALVMGSDRGV TAQLTSSLVG EKKKEDARGA HFLDLGLVDH PVKASKNLRP DMSLSLRQPQ 300 YREKLAVRKA EDQRPPWEGF PVGNPRLLIS NSRNRITGSN WAQLSSPQEE FQLNSFRSQK 360 PSTEMQIDFT GAVSRPSVLS RPVSGDSEIS DVEASGRDER AAVTAVADDK RPRKRGRKPA 420 NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQKKLKEM 480 ESGRERGGSS CMEKSESGLE KIEIESVEDE VTVRVSCPLD RHPVCKVIQA LKEGEMRVID 540 SKMAAGNDKV FHIFVIKSQG AEQQVTKEKL MAVFSKESNS CLHPLA

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MGDDNWNDEE KAIVASVLGT RAFDYLISSS LGNECSLTSL ENHDNLQSKL SDLVDNPNSD  60
SFSWNYAIFW QISRSKSGDL VLVWGDGSCR EPREGEEFEI ARILSIRLED ENQQRMRKRV  120
LQKLHVLFGG LDEDNYAFGL DRVTDTEMFF LISMYFSFPQ GEGGPGKCFL SGKHLWYSDA  180
LKSTYDYCFR SNLSKSAGIQ TVVLVPTDVG VVELGSIRSI PESMELLHSI RSSFSSKPRD  240
ALVMGSDRGV TAQLTSSLVG EKKKEDARGA HFLDLGLVDH PVKASKNLRP DMSLSLRQPQ  300
YREKLAVRKA EDQRPPWEGF PVGNPRLLIS NSRNRITGSN WAQLSSPQEE FQLNSFRSQK  360
PSTEMQIDFT GAVSRPSVLS RPVSGDSEIS DVEASGRDER AAVTAVADDK RPRKRGRKPA  420
NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQKKLKEM  480
ESGRERGGSS CMEKSESGLE KIEIESVEDE VTVRVSCPLD RHPVCKVIQA LKEGEMRVID  540
SKMAAGNDKV FHIFVIKSQG AEQQVTKEKL MAVFSKESNS CLHPLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	418	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-161	bHLH family protein