PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996727.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 694aa MW: 77076.6 Da PI: 6.8877

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	524	556	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps +++ LA+++gLt +qV++WF N R + XP_024996727.1 524 HPYPSBADKHMLATQTGLTRNQVSNWFINARVR 556 89*****************************87 PP
2	BELL	100.9	9.3e-33	372	440	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kka+Ll ++eeV++rYkqy +q+q+v+ssFe+vaglg+a+pY+ lAlkaiSrhF +k+ i+eq+ XP_024996727.1 372 EFHRKKARLLYMQEEVCRRYKQYLQQMQMVVSSFETVAGLGAATPYVCLALKAISRHFHFVKTVISEQL 440 7899***************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MEMNNLRVES HVAQKNRRHK LRFQQNSGDM NHQHPPQDHP QFEPKDIHRP FSYNPNVYPS 60 EMLNSVPRNP HLLLPLGHGF VSVDQDSFPG SDSGSGMGSS QPDQRILAGS NGGTFANLPN 120 DSNNWKTVVS SQQVGNDHWN LVSYSNTGSM NIDHRSLNSG GYGYHQDVQN VPAFSSSPFY 180 HSILPEDQVT LAQPHQGKND SGMNQSIPYW MNNSDESSYL ANRIHDHREQ MTTATTMAAN 240 EGNCNTQALC LSLSSVPQPK DDLLTLQPGE RPLKSDLLPN SDLKCFMGVS SFAHRNAGPL 300 GPFTGYATIL KNSKYLKPAQ ELLNVNCEVG DQELLQTCHD VFSQKILEEE MSRASGGSNE 360 HSTSGAESLQ PEFHRKKARL LYMQEEVCRR YKQYLQQMQM VVSSFETVAG LGAATPYVCL 420 ALKAISRHFH FVKTVISEQL LQIRKMVGEG LSSSTTTSSK VFDANATSTS RLKSIDQRLS 480 KSGGGVGGAA GFFTSPQPVW RPQRGLPERA IAVLKTWLFD HFLHPYPSBA DKHMLATQTG 540 LTRNQVSNWF INARVRIWKP MVEEIHTLET KGLAEPNSTN PPPAGQDSSR MDMSSFSNMQ 600 PPEQSCSRNP QTALTGDEPN DQQLQDHEKL ARPEYQIPLA SMDRLMSILP YPRATFDASG 660 LGPVSLTLGL RQNAENVQQL QQHFGGQLIH DFVG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MEMNNLRVES HVAQKNRRHK LRFQQNSGDM NHQHPPQDHP QFEPKDIHRP FSYNPNVYPS  60
EMLNSVPRNP HLLLPLGHGF VSVDQDSFPG SDSGSGMGSS QPDQRILAGS NGGTFANLPN  120
DSNNWKTVVS SQQVGNDHWN LVSYSNTGSM NIDHRSLNSG GYGYHQDVQN VPAFSSSPFY  180
HSILPEDQVT LAQPHQGKND SGMNQSIPYW MNNSDESSYL ANRIHDHREQ MTTATTMAAN  240
EGNCNTQALC LSLSSVPQPK DDLLTLQPGE RPLKSDLLPN SDLKCFMGVS SFAHRNAGPL  300
GPFTGYATIL KNSKYLKPAQ ELLNVNCEVG DQELLQTCHD VFSQKILEEE MSRASGGSNE  360
HSTSGAESLQ PEFHRKKARL LYMQEEVCRR YKQYLQQMQM VVSSFETVAG LGAATPYVCL  420
ALKAISRHFH FVKTVISEQL LQIRKMVGEG LSSSTTTSSK VFDANATSTS RLKSIDQRLS  480
KSGGGVGGAA GFFTSPQPVW RPQRGLPERA IAVLKTWLFD HFLHPYPSBA DKHMLATQTG  540
LTRNQVSNWF INARVRIWKP MVEEIHTLET KGLAEPNSTN PPPAGQDSSR MDMSSFSNMQ  600
PPEQSCSRNP QTALTGDEPN DQQLQDHEKL ARPEYQIPLA SMDRLMSILP YPRATFDASG  660
LGPVSLTLGL RQNAENVQQL QQHFGGQLIH DFVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	8e-84	TALE family protein