PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996688.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 425aa MW: 47447.7 Da PI: 5.9117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	269	310	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +Er+RR+++N++f Lr+++P K++Ka+ L Av YI +L XP_024996688.1 269 MERQRREKLNQRFYALRSVVPYV-----SKMDKASLLADAVTYIGEL 310 8*******************6.....5*************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MDETVTYGFS SVPMLVQETP SLLQQRLKYM VESCQEWWDY AIFWQSSKGN DPHFLVSFGD 60 CYLKGPKNFL SQTISNTRHH QSHVTNLDQG HELDTISEFI MASVMRSYVL GEDIVGGTFG 120 SGSSVWLAGD HELGMNGSQR AKEAYLRGIK TLVCIATSWG VVELGSTNLL EENWGLVPLA 180 KSLFSSETNL TINGNPLHQV QLLGTQKDSS GEGNEEGKGK TVMCESQTDW LLLDVGRPST 240 STRDNMPKKK SQKTMNTTTD QVNPKYVDME RQRREKLNQR FYALRSVVPY VSKMDKASLL 300 ADAVTYIGEL KSKIETLTEK ADNLHINVDD GAPRTETLLS TNCRIHETEV EVKIIGSEAV 360 IRVQSPDVNH PAARLMDAMK SLEIRVHHAS VSNINGMVIQ DIVGHIPQAF LTDERALRVS 420 ILQEL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MDETVTYGFS SVPMLVQETP SLLQQRLKYM VESCQEWWDY AIFWQSSKGN DPHFLVSFGD  60
CYLKGPKNFL SQTISNTRHH QSHVTNLDQG HELDTISEFI MASVMRSYVL GEDIVGGTFG  120
SGSSVWLAGD HELGMNGSQR AKEAYLRGIK TLVCIATSWG VVELGSTNLL EENWGLVPLA  180
KSLFSSETNL TINGNPLHQV QLLGTQKDSS GEGNEEGKGK TVMCESQTDW LLLDVGRPST  240
STRDNMPKKK SQKTMNTTTD QVNPKYVDME RQRREKLNQR FYALRSVVPY VSKMDKASLL  300
ADAVTYIGEL KSKIETLTEK ADNLHINVDD GAPRTETLLS TNCRIHETEV EVKIIGSEAV  360
IRVQSPDVNH PAARLMDAMK SLEIRVHHAS VSNINGMVIQ DIVGHIPQAF LTDERALRVS  420
ILQEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-52	bHLH family protein