PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996685.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 506aa    MW: 55970.8 Da    PI: 6.5497
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3955e-30140244199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+k+ tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g   +
  XP_024996685.1 140 FDKAVTPSDVGKLNRLVIPKQHAERYfpldSSTNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGVtGK 234
                     89***************************9555568889************************************************65477778 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_024996685.1 235 DRLFIDWRRR 244
                     8888888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MNFMGKSDDD GGNGGRQQRE EDYSFWEDEE EKGKPPPTAD RLFSSSVSDH HQHSRHQPQE  60
KSFLSPPPYH HHHCGGGWLL DGHSQGGEPS SRFDPMTVDS SLVSVTPVAG DGDGDGDGGA  120
HGRHEEEESS GTEVEREHMF DKAVTPSDVG KLNRLVIPKQ HAERYFPLDS STNDKGLLLN  180
FEDRNGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DVVSFQRGVG VTGKDRLFID  240
WRRRLDASIN PPPYQLSSSS SSNLSFPLIS HQNFPFHTRN SNINTHPWNP LVLQSHPALP  300
WRNPNLMLPP TNSYPSSSYT RGSPYGSVVN VNKNGSRSVI YFGPDGCRSP QQQIQMMQMQ  360
QRRGFGVGIG IDPPPPPPTA AVAASPTPPA VILESLPQVH GKASGKRLRL FGVNMDCPFT  420
EEDDQDYEPP SELNPTTTNC DHNRSPPLIP PSISSSSTIP YLQLRPHGGG TEYNQSTILS  480
SSSSAHAFNI VSKSTASTNM PLDLDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-60B3 family protein