PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024996649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 480aa MW: 53491 Da PI: 8.6569 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 55 | 98 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT +Ed ll+d+vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l XP_024996649.1 55 WTDDEDNLLADVVKKFNGRNWKKIAQYIP-GRTDVQCLHRWQKVL 98 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 104 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ +++ v+++G W+ Ia++++ gR +kqc++rw+++l XP_024996649.1 104 KGPWSKEEDDCIIRMVEKHGCMKWSVIAKYLP-GRIGKQCRERWHNHL 150 79******************99**********.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.2 | 1.4e-16 | 156 | 198 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eE+ l ++++ +G++ W+ Iar ++ gRt++ +k++w+ XP_024996649.1 156 KDTWTKEEESTLTHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 198 679*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence |
MIGVKKERHA SDFTKEVGFT SSSSISNSSC DANTPRSRSS CGSGNQTKRS SQAGWTDDED 60 NLLADVVKKF NGRNWKKIAQ YIPGRTDVQC LHRWQKVLNP EIVKGPWSKE EDDCIIRMVE 120 KHGCMKWSVI AKYLPGRIGK QCRERWHNHL DPAIKKDTWT KEEESTLTHY HQIYGNKWAE 180 IARFLPGRTD NAIKNHWNCS FKRKLDLNMP PMLPSNIQET THTDLHNSEI KNEGRGLSVV 240 QRKTGQKRLF GRGNSLENDL NACSTDLALG TGGDACLGFA RYANGCGFKS PPNRLPLAVL 300 DPTKSSQMIS EPCKRRRIDE INDLKLGSSP NSLFLSLSTF GHTDSNSTKN GTSLTLENSF 360 RSENGRFSCS TPPDLTLSIS YSPKSAISYE NPPSIMSKKA GGVNGSCPST PDQDDCSEEI 420 RTTGSENMKQ GSDWWVHRSQ TLLGRRLDYV FSSEWDPTTV KCCNSSSMTP SLNVNMGTGC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 314 | 318 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 4e-80 | MYB family protein |