PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996546.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 476aa MW: 53093.5 Da PI: 8.2877

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.3e-33	80	161	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ + + +g+kktLvfy+grapkge+t+W+mheyr+ XP_024996546.1 80 VIKTDDPEWFFFCPRDRKYPNGHRSNRATSAGYWKATGKDRTIKSRgrsDAQIIGMKKTLVFYRGRAPKGERTHWIMHEYRA 161 5677888************************************97766777*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVTSTRSQWF SKVDQCFSLS FSSLLLTATR VFLQFLLSFL HRLSDGSTAA GFQIPTDGRG 60 AHQLLLTPKN QRPPFRDQSV IKTDDPEWFF FCPRDRKYPN GHRSNRATSA GYWKATGKDR 120 TIKSRGRSDA QIIGMKKTLV FYRGRAPKGE RTHWIMHEYR ATEKDLDGTN PGQSAYVLCR 180 LFRKADEITD ASKCDEAEPT GLSPTTHKSS PGNPSVDFLQ APSVQDVQID GTEKWATDTA 240 DNLTHNAVIP FENRISDVDE TTAKETAEKI LVPPRSCYSS VNLPENGGVN IINDQGASSA 300 GSNVGSIYSR GNYWEQSTSQ TNPHTVANFP IDRPEIKIRT RQSQTGQSQT DPSSENVMGQ 360 GRAARRLRLQ VEPSSVSISH GDETSSTVSE VCDDAEDTAR SFDGSERINP ELVPKHDAKE 420 NDQKHNRLQM KPLILVRAYC GGRFLSSSLI QIMSIFLVIF VMMISLGVRE RPIFHL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVTSTRSQWF SKVDQCFSLS FSSLLLTATR VFLQFLLSFL HRLSDGSTAA GFQIPTDGRG  60
AHQLLLTPKN QRPPFRDQSV IKTDDPEWFF FCPRDRKYPN GHRSNRATSA GYWKATGKDR  120
TIKSRGRSDA QIIGMKKTLV FYRGRAPKGE RTHWIMHEYR ATEKDLDGTN PGQSAYVLCR  180
LFRKADEITD ASKCDEAEPT GLSPTTHKSS PGNPSVDFLQ APSVQDVQID GTEKWATDTA  240
DNLTHNAVIP FENRISDVDE TTAKETAEKI LVPPRSCYSS VNLPENGGVN IINDQGASSA  300
GSNVGSIYSR GNYWEQSTSQ TNPHTVANFP IDRPEIKIRT RQSQTGQSQT DPSSENVMGQ  360
GRAARRLRLQ VEPSSVSISH GDETSSTVSE VCDDAEDTAR SFDGSERINP ELVPKHDAKE  420
NDQKHNRLQM KPLILVRAYC GGRFLSSSLI QIMSIFLVIF VMMISLGVRE RPIFHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	2e-63	NAC family protein