PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996544.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 576aa MW: 63864.3 Da PI: 6.2523

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.4	7.2e-33	80	161	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ + + +g+kktLvfy+grapkge+t+W+mheyr+ XP_024996544.1 80 VIKTDDPEWFFFCPRDRKYPNGHRSNRATSAGYWKATGKDRTIKSRgrsDAQIIGMKKTLVFYRGRAPKGERTHWIMHEYRA 161 5677888************************************97766777*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MVTSTRSQWF SKVDQCFSLS FSSLLLTATR VFLQFLLSFL HRLSDGSTAA GFQIPTDGRG 60 AHQLLLTPKN QRPPFRDQSV IKTDDPEWFF FCPRDRKYPN GHRSNRATSA GYWKATGKDR 120 TIKSRGRSDA QIIGMKKTLV FYRGRAPKGE RTHWIMHEYR ATEKDLDGTN PGQSAYVLCR 180 LFRKADEITD ASKCDEAEPT GLSPTTHKSS PGNPSVDFLQ APSVQDVQID GTEKWATDTA 240 DNLTHNAVIP FENRISDVDE TTAKETAEKI CPELGAYLDS RFANDFGSDN NGLDFQDGTS 300 EQDIALSELL SLLQNGNECS FKETFDQKNT EVGCETPISG PVPTVPQGLP FCRTTKSDAE 360 VAIDVAQKQI LVPPRSCYSS VNLPENGGVN IINDQGASSA GSNVGSIYSR GNYWEQSTSQ 420 TNPHTVANFP IDRPEIKIRT RQSQTGQSQT DPSSENVMGQ GRAARRLRLQ VEPSSVSISH 480 GDETSSTVSE VCDDAEDTAR SFDGSERINP ELVPKHDAKE NDQKHNRLQM KPLILVRAYC 540 GGRFLSSSLI QIMSIFLVIF VMMISLGVRE RPIFHL

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MVTSTRSQWF SKVDQCFSLS FSSLLLTATR VFLQFLLSFL HRLSDGSTAA GFQIPTDGRG  60
AHQLLLTPKN QRPPFRDQSV IKTDDPEWFF FCPRDRKYPN GHRSNRATSA GYWKATGKDR  120
TIKSRGRSDA QIIGMKKTLV FYRGRAPKGE RTHWIMHEYR ATEKDLDGTN PGQSAYVLCR  180
LFRKADEITD ASKCDEAEPT GLSPTTHKSS PGNPSVDFLQ APSVQDVQID GTEKWATDTA  240
DNLTHNAVIP FENRISDVDE TTAKETAEKI CPELGAYLDS RFANDFGSDN NGLDFQDGTS  300
EQDIALSELL SLLQNGNECS FKETFDQKNT EVGCETPISG PVPTVPQGLP FCRTTKSDAE  360
VAIDVAQKQI LVPPRSCYSS VNLPENGGVN IINDQGASSA GSNVGSIYSR GNYWEQSTSQ  420
TNPHTVANFP IDRPEIKIRT RQSQTGQSQT DPSSENVMGQ GRAARRLRLQ VEPSSVSISH  480
GDETSSTVSE VCDDAEDTAR SFDGSERINP ELVPKHDAKE NDQKHNRLQM KPLILVRAYC  540
GGRFLSSSLI QIMSIFLVIF VMMISLGVRE RPIFHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	8e-75	NAC family protein