PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996524.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LSD

Protein Properties

Length: 145aa MW: 15085.8 Da PI: 7.7286

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C+ V XP_024996524.1 28 CSGCRNLLLYPIGATSVCCAVCNSV 52 ***********************98 PP
2	zf-LSD1	44.6	2.3e-14	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA sV+C++C+t+ XP_024996524.1 67 CGGCHTLLMYIRGAASVQCSCCHTI 91 ***********************97 PP
3	zf-LSD1	47.4	3.1e-15	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+GA+sV+Ca+C+++ XP_024996524.1 105 CGSCRMLLMYPYGARSVKCAVCQFI 129 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MPVPLAPYPT PPPPFTPPAT GSESQLVCSG CRNLLLYPIG ATSVCCAVCN SVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA ASVQCSCCHT INLALEGNQV AHVNCGSCRM LLMYPYGARS 120 VKCAVCQFIT AIGVSASSME QKFIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	4e-74	LSD family protein