PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996317.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 273aa    MW: 31135.1 Da    PI: 6.446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd+ll+ ++kq+G ++W++ +++ g+ R++k+c++rw +yl
   XP_024996317.1 14 RGPWSHEEDQLLIAYIKQHGHPNWRALPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.22.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_024996317.1  67 RGNFTKEEEDTIIHLHEMLGNR-WSLIAAKLP-GRTDNEIKNIWHTHL 112
                      89********************.*********.***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MGRAPCCEKM GLKRGPWSHE EDQLLIAYIK QHGHPNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TKEEEDTIIH LHEMLGNRWS LIAAKLPGRT DNEIKNIWHT HLKKRLENKE  120
TITHISKKRQ TKSKPALSAQ SPEETTGSQC LVQPDHNSLD KVRSVSYQPS TSESSSITEA  180
TNELPSVTKH EETNHEMFLD DSFWSETLSG VGDNNMESDP AKSIPGVEFP TSLLTMIENT  240
DTRNPNTGCN MDGIDLWSDI FMHIEELPEL PEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-79MYB family protein