PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996074.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 766aa    MW: 87471 Da    PI: 8.4035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.2e-2151125189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn+YA+++GF++r+ + ++s+ +g++++r++vCskeg++++              +rtgC a ++v+k ++gkw+++++++eHnH+l
  XP_024996074.1  51 EFYNSYATQIGFKIRIGQLYRSRVDGSVVSRRYVCSKEGFQTN--------------SRTGCPAFIRVQKGDSGKWVLANIKKEHNHDL 125
                     6***************************************987..............589***************************98 PP
2FAR169.48.4e-22200275190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     kfY +YA ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w+v++l++eHnHel 
  XP_024996074.1 200 KFYYTYAANMGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQDSGRWVVDRLSKEHNHELD 275
                     6**************************************9998..............4899***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    
MNRQDLGNTM TVRAKPGLAA FKTNGQREDE GESRMDPYVG LEFDSAEAAQ EFYNSYATQI  60
GFKIRIGQLY RSRVDGSVVS RRYVCSKEGF QTNSRTGCPA FIRVQKGDSG KWVLANIKKE  120
HNHDLDISGE VRTPTIQRKV IPAPKTTSVV SSRTGIRSLE DDGPSGVIDL KRLKREELEA  180
EPRGEPCKGL DFISANEAYK FYYTYAANMG FKVRIGQLFR SKNDGSITSR RFVCSKEGHQ  240
HPSRVGCGAF MRIQRQDSGR WVVDRLSKEH NHELDSPEDA GRKIAAAAKG FKEELSSGLE  300
NLDLLETNGG LSLVKRDRGS GIGSRWYSVL LEYFQSRQAE DTGFFYALEV DNGRCMSLFW  360
VDGRSRFSCT QFGDAIVFDT SYRRGSFTVP FASFVGVNHH RQPVLLGCAL IADESEESFT  420
WVFQAWVRAM SGKRPVSIIA DQDKCIQNSI AQVFPGTHHR FSAWQIVSME HENLGALRSM  480
DEFKFEYETC ISQSQTASEF DSAWSVLVTK YNIKENAWLK EMYKMRKSWV PLYLRGIFFA  540
GIPVDGSMKS YFGTFLTSQV PLNEFLMRYE KATEHHREEE RKEDFNSFNL QTVLHTKDPL  600
EEQCRRLYTI TVFKVFQKEL LESYSYVGIK INIEGAISRY LVQRCGNGDE RNTVAFNASN  660
LNISCSCKMF EFEGILCRHA LKVFQIMNIR EIPSRYILHR WTKSAKYGIL RDVDSIGGSQ  720
DFKALMVWSL REEAHSYIDA GAASIERYKL AFEILQEGRR NLCWQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1 family protein