PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995957.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 415aa MW: 47298 Da PI: 6.0311

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	207	258	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_024995957.1 207 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 258 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MLFYSEFQLL QGGFLEFNGD HEHLHQHHQH QQQFMVKNTY ENNGNQMVDY LINNPIQHLP 60 SGAGFSSPNS FDKLSFADVM QFADHGPKLA LNQNKTSCHD HHDQEDQETG IDPIYFLKFP 120 VLNERLQEDH HHHHQSLLPP LGDDEHVVTE GGERSREEEA RVSEGNNMSV RLQFIGDQDV 180 HKTLVSEGKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR 240 GDQASIIGGA IEFVRELEQL LQCLESQKRR KLYGDNTPRV IGDSSSLPIL QQGPAAAVFY 300 PPPPDDEIKL VEYDGGLKEE TAESKSCLAD VEVRLLGFDA MIKILCRRRP GQLIKTIAAL 360 EDLQLNILHT NITTIEQTVL YSFNVKVTSE VRFSAEDIAN SVQQIISFVH ENTGT

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MLFYSEFQLL QGGFLEFNGD HEHLHQHHQH QQQFMVKNTY ENNGNQMVDY LINNPIQHLP  60
SGAGFSSPNS FDKLSFADVM QFADHGPKLA LNQNKTSCHD HHDQEDQETG IDPIYFLKFP  120
VLNERLQEDH HHHHQSLLPP LGDDEHVVTE GGERSREEEA RVSEGNNMSV RLQFIGDQDV  180
HKTLVSEGKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR  240
GDQASIIGGA IEFVRELEQL LQCLESQKRR KLYGDNTPRV IGDSSSLPIL QQGPAAAVFY  300
PPPPDDEIKL VEYDGGLKEE TAESKSCLAD VEVRLLGFDA MIKILCRRRP GQLIKTIAAL  360
EDLQLNILHT NITTIEQTVL YSFNVKVTSE VRFSAEDIAN SVQQIISFVH ENTGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	219	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-129	bHLH family protein