PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995903.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 960aa MW: 107331 Da PI: 7.4168

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.7	1.5e-08	186	240	22	76
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 +rgk ++ + +ev++++++ g++r +k+ kw+n+ ++++k+ e+e++++ e+ XP_024995903.1 186 GRGKTRAEKDREVAEFLQRNGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 240 4788999999**************************************9965544 PP

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence
MSDNKGDKPP KKQHSTPSPK DNPPQESLEE PPVVVPGAPT FLTPPPPQPP SQLYISTEPL 60 NPKRPRYTSA TGQWKLLPSP SQKQISINVV GSEKTPSPSS NQPPTHGAVA AASSSDTASS 120 PSHSPRPSVS GQETSKPEGE QQYTQHQLRK GKYVSPVWKP NEMLWLARAW RIQYQGGGGS 180 SGSVQGRGKT RAEKDREVAE FLQRNGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQI 240 GKSYFRLSPY ERKLHRLPAS FDEEVFEELA QFMGSRMRTP QNSICRGTSP FLLTSGSGGS 300 GDQETRLAVL DAKSFPPPPF RDDDLPFSSS GRAGRHLIMA GTEGYLHGVR GSLLGIEGSP 360 VDVGGVGQYE TSSTSTSKEL RRIGKVRMVW EELVSLWAED GEHHRGRVKV QGTSFLNADE 420 LTFLDDSMVA CTLESFEDGN SPLKGFSVDR FVPGQQVKVF GRRKSSFSAP HPSGTAIPPW 480 EFQDPTDYYL GCLRVQPPTL PSLIDLPWYL QEPPSEELRF PLRKDLYRDL PQGKELFFTT 540 SSEPLDCRSI TFEILSPIAR SNPTLTTSTR ESFIGLWDDC INRVVSKFSN LEMVCIRKPP 600 YPPSSNDGIQ DQWPNVTGFV RNFCLWRGEE TDKLREDNNL DPSSLMVQKM LWSYLDLPYI 660 LGYYTVGYIV TFCALSRTHD RLIRTDLHTV DLSTPGDRIK AFVPCWRIAG LLSLLADRCA 720 NFQQISKAFP YSDFERIDLG NGTVIELTPN YMTRVFSSKR KWVTVKEIYD FLDHRIPHSE 780 YIFQSSERDL SLSFKPRGCK LKLSNFEQLV EALKHVTKAL VALHDLSFMH RDLGWDKVMQ 840 RSDRENEWFV IGFDEAASAP QIYPPQQEVG VAAATTVGGG GGGDRQAPEM KGRGMHGVKV 900 DVWGVGQMLK TCGLVGLPKA LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSMSAAAGDY

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence

MSDNKGDKPP KKQHSTPSPK DNPPQESLEE PPVVVPGAPT FLTPPPPQPP SQLYISTEPL  60
NPKRPRYTSA TGQWKLLPSP SQKQISINVV GSEKTPSPSS NQPPTHGAVA AASSSDTASS  120
PSHSPRPSVS GQETSKPEGE QQYTQHQLRK GKYVSPVWKP NEMLWLARAW RIQYQGGGGS  180
SGSVQGRGKT RAEKDREVAE FLQRNGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQI  240
GKSYFRLSPY ERKLHRLPAS FDEEVFEELA QFMGSRMRTP QNSICRGTSP FLLTSGSGGS  300
GDQETRLAVL DAKSFPPPPF RDDDLPFSSS GRAGRHLIMA GTEGYLHGVR GSLLGIEGSP  360
VDVGGVGQYE TSSTSTSKEL RRIGKVRMVW EELVSLWAED GEHHRGRVKV QGTSFLNADE  420
LTFLDDSMVA CTLESFEDGN SPLKGFSVDR FVPGQQVKVF GRRKSSFSAP HPSGTAIPPW  480
EFQDPTDYYL GCLRVQPPTL PSLIDLPWYL QEPPSEELRF PLRKDLYRDL PQGKELFFTT  540
SSEPLDCRSI TFEILSPIAR SNPTLTTSTR ESFIGLWDDC INRVVSKFSN LEMVCIRKPP  600
YPPSSNDGIQ DQWPNVTGFV RNFCLWRGEE TDKLREDNNL DPSSLMVQKM LWSYLDLPYI  660
LGYYTVGYIV TFCALSRTHD RLIRTDLHTV DLSTPGDRIK AFVPCWRIAG LLSLLADRCA  720
NFQQISKAFP YSDFERIDLG NGTVIELTPN YMTRVFSSKR KWVTVKEIYD FLDHRIPHSE  780
YIFQSSERDL SLSFKPRGCK LKLSNFEQLV EALKHVTKAL VALHDLSFMH RDLGWDKVMQ  840
RSDRENEWFV IGFDEAASAP QIYPPQQEVG VAAATTVGGG GGGDRQAPEM KGRGMHGVKV  900
DVWGVGQMLK TCGLVGLPKA LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSMSAAAGDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-07	Trihelix family protein