PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995898.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 523aa MW: 60006.9 Da PI: 8.5478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.2	3.4e-10	7	49	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 e++ r+++ +r+gCka +k++++k ++ +e++++++ HnH+l+ XP_024995898.1 7 ERRYRNTNLKRCGCKAWIKIHLTKdRSSYEIYEFVEAHNHALF 49 67788999*************999*************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MAIQSSERRY RNTNLKRCGC KAWIKIHLTK DRSSYEIYEF VEAHNHALFN TDEVYEFQNI 60 LNSSSYKVGA IRAHRIQTTL NGGFEHNQCS EIDFKNFKRD AVACVGEKDA KILSRVIFSS 120 ISAMIRSWEP FSGQMRLLES TTKSLVMHAM IFVPFLAVDN HKASIVVGSG LISGETIENF 180 TWVLRAFLKC HEKQPVFVIT DQCSAMKQAI PLVFTEAKHR LCMWHIMKKV HSKVSVALNQ 240 DPMFSQVINK LVWNTHIGPS EFETKWQEMI AQYNLGGDPC RNVFFDIQKE IKKAVWFCGI 300 ETVECPGDLK TFIISHKNKK SSVSTTYRVS RNYPVNTVEY ECNLFTCYGY LCRHAFKFLI 360 NDEVDSIPDQ YVLRRWKQNL VPVQLQSARV RYGEVDAEKD KYIIDVYSKV DDIISIARND 420 KALLSRLEKT LDKFLVDIEK EVSYEDPSQQ KMDAIRDHLG VSIPDDVDIL PPSGIRNKGC 480 GTGKRLVSVY EKIQSASKKT RQKCATCGQR TGHDSRNCPE LIE

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MAIQSSERRY RNTNLKRCGC KAWIKIHLTK DRSSYEIYEF VEAHNHALFN TDEVYEFQNI  60
LNSSSYKVGA IRAHRIQTTL NGGFEHNQCS EIDFKNFKRD AVACVGEKDA KILSRVIFSS  120
ISAMIRSWEP FSGQMRLLES TTKSLVMHAM IFVPFLAVDN HKASIVVGSG LISGETIENF  180
TWVLRAFLKC HEKQPVFVIT DQCSAMKQAI PLVFTEAKHR LCMWHIMKKV HSKVSVALNQ  240
DPMFSQVINK LVWNTHIGPS EFETKWQEMI AQYNLGGDPC RNVFFDIQKE IKKAVWFCGI  300
ETVECPGDLK TFIISHKNKK SSVSTTYRVS RNYPVNTVEY ECNLFTCYGY LCRHAFKFLI  360
NDEVDSIPDQ YVLRRWKQNL VPVQLQSARV RYGEVDAEKD KYIIDVYSKV DDIISIARND  420
KALLSRLEKT LDKFLVDIEK EVSYEDPSQQ KMDAIRDHLG VSIPDDVDIL PPSGIRNKGC  480
GTGKRLVSVY EKIQSASKKT RQKCATCGQR TGHDSRNCPE LIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	498	504	KKTRQKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	3e-21	FAR1 family protein