PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995856.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 327aa    MW: 37605.4 Da    PI: 10.0142
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.7e-1935130190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                     ++Y++YA  vGF++r s++k ++  g + +r fvCsk+g + +++ +       e++rr+++ +rtgCka+lkv+  k +g++ev++l +  nH 
  XP_024995856.1  35 NMYRKYADVVGFDIRSSRNKMNSLGG-VQTRYFVCSKKGVPPKKEFDslkvssGERRRRNTNFKRTGCKACLKVHYVKeSGRYEVYHLIEAQNHM 128
                     58****************99996666.99************99998899999889999999***************999**************** PP

            FAR1  89 la 90 
                     l+
  XP_024995856.1 129 LC 130
                     98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MGESPGGTKL WISKVDSNIC PKVGELFSSV DFVENMYRKY ADVVGFDIRS SRNKMNSLGG  60
VQTRYFVCSK KGVPPKKEFD SLKVSSGERR RRNTNFKRTG CKACLKVHYV KESGRYEVYH  120
LIEAQNHMLC RSGEKMFTRS RRQLDYKDCK NVYHTSSSKV GITQSCRMQL AINGGLVSSG  180
GTARDHMNFR RDIMLFAGNK DAQMLINKMS KRREHCPKYF FEYKCDEKEV ITIFWADETT  240
RMNYKHFGDT ISFDVTFRTN KHAMIFVPFV AIDNHKKSVV VGASLIRCEF VINFTWVLKA  300
FMKAHDSQPQ FVMTDQCATM KQAICGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-33FAR1 family protein