PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995812.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 319aa    MW: 35784.8 Da    PI: 7.497
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.23.5e-3364172199
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k ltpsdv+k++rlv+pk++ae++            +++++  l++ede+g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++
  XP_024995812.1  64 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdsapAVDQQKGLLLSFEDETGKPWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFERH 158
                     99****************************998888444457889************************************************75 PP

                     SS.SEE..EEEEE-S CS
              B3  86 gr.sefelvvkvfrk 99 
                      r ++ +l+++++r+
  XP_024995812.1 159 -RfDCDRLFIGWRRR 172
                     .559999******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MSLTHLSSNH LPETLWYPYP IMDSSPKFPI DHHPHPPPTA FNFNLNPHYD DNQPQDSNCK  60
QPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGGDSAPA VDQQKGLLLS FEDETGKPWR  120
FRYSYWNSSQ SYVLTKGWSR FVKEKRLDAG DVVLFERHRF DCDRLFIGWR RRPAAMPMLD  180
SVPVAQPTGG GGGGGGGAGW TTSGFYNAHY NYPSHHLPLS LPHPYKPDCL HAGGINDNVE  240
KKQRDMVAAS GNPRRVRLFG VNLECPDECE PSTPDGSSHQ GGGGAGGQPH YQYHNNLNLN  300
QNQDMNINFS QMRNQQHQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-62B3 family protein