PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995756.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Trihelix
Protein Properties Length: 253aa    MW: 28495 Da    PI: 4.4803
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-131993276
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
                    Wt +e l L++ ++ +e + r++ +  ++W+ + +++ + g++r+ +qC+ kw++l  +ykkik++ +k++s +s
  XP_024995756.1 19 WTVEESLILVNEVSAVEADCRDTLASFQKWKIIVENCNALGVNRNLNQCRRKWDSLLSDYKKIKQSGSKKASFNS 93
                    *****************************************************************9999754444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MEQDGVGALR TRSKVAPDWT VEESLILVNE VSAVEADCRD TLASFQKWKI IVENCNALGV  60
NRNLNQCRRK WDSLLSDYKK IKQSGSKKAS FNSDLFKVIE WYVREYEGGC DTDPDSDPEA  120
VPEPVLASMV QSVTSGSKKQ RSKIIPQKRS IEDTPKPKRH IKSEEIKVEE SCSEPTNDIL  180
NGSMRPEETN QEQQEQAMAD TLRENAELIE AIVKEDSMND ESTIDLTRLN GDKLIVCLSN  240
LVVALDQLSE FVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-49Trihelix family protein