PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995747.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 187aa MW: 20936.8 Da PI: 7.5858

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	8.1e-45	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_024995747.1 7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPFHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQIQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024995747.1 102 MAQAE 106 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MAAGHSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQELPFHQR 60 ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQIQL AMAQAEILCT IQQQQQQQPP 120 SAINGRLPEL HPAQSTTILM DDVVSNDMIS SYLHNTITNH HHQHFNLTSN SVIQYDSLKR 180 ESSSLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-71	LBD family protein