PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995742.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 439aa MW: 49338.6 Da PI: 6.4406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.7	1.1e-49	57	182	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF+Ptd+el+++yLkkk++g+++ + ++i+evd +++ePwdLp ++ +++ew+fFs r kky++g++++rat+sgyWkatgk+++v+s XP_024995742.1 57 FPGFRFSPTDNELISYYLKKKLQGSDNCV-DIIPEVDFCRHEPWDLPaLSIVRSDNEWFFFSARGKKYPNGSQSKRATQSGYWKATGKERNVKS- 149 69**********************887.99***********657777899**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g+k+tLvf++grapkge+t+W+mhey + XP_024995742.1 150 GAVTIGTKRTLVFHTGRAPKGERTEWIMHEYCM 182 999**************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MSAKEVDGGG GDWSMKDIVA VDGGYEAAAT TTTPANDAER TRDMQLQLSI AKSSSVFPGF 60 RFSPTDNELI SYYLKKKLQG SDNCVDIIPE VDFCRHEPWD LPALSIVRSD NEWFFFSARG 120 KKYPNGSQSK RATQSGYWKA TGKERNVKSG AVTIGTKRTL VFHTGRAPKG ERTEWIMHEY 180 CMTDTTQESL VVCRLRRNSD FRLNESSRGS SDQRNLSAAD NGNSGTNEYA NTQIEWFDEA 240 NAVKTCSKES TSSYRSHSFE QNDSGSESER QLIHESPNGS SSQLKECDNE DDWFADIIND 300 DIIKLDESAS NSFTFHGVLS GNLPLLVHDP TKCNQQETIS AHEQGTAFRR IRLRQQKGQT 360 QDVNPDGDQD QKSSGCVISV LAGATNNVAR FRSALVFLCL LMLFVFWQRD HLPSYSKQHL 420 GINLKRQLRY WLHKAAEYI

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MSAKEVDGGG GDWSMKDIVA VDGGYEAAAT TTTPANDAER TRDMQLQLSI AKSSSVFPGF  60
RFSPTDNELI SYYLKKKLQG SDNCVDIIPE VDFCRHEPWD LPALSIVRSD NEWFFFSARG  120
KKYPNGSQSK RATQSGYWKA TGKERNVKSG AVTIGTKRTL VFHTGRAPKG ERTEWIMHEY  180
CMTDTTQESL VVCRLRRNSD FRLNESSRGS SDQRNLSAAD NGNSGTNEYA NTQIEWFDEA  240
NAVKTCSKES TSSYRSHSFE QNDSGSESER QLIHESPNGS SSQLKECDNE DDWFADIIND  300
DIIKLDESAS NSFTFHGVLS GNLPLLVHDP TKCNQQETIS AHEQGTAFRR IRLRQQKGQT  360
QDVNPDGDQD QKSSGCVISV LAGATNNVAR FRSALVFLCL LMLFVFWQRD HLPSYSKQHL  420
GINLKRQLRY WLHKAAEYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	2e-84	NAC family protein