PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995708.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 936aa MW: 102633 Da PI: 5.5101

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	563	614	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_024995708.1 563 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 614 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence
MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA 60 DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN 120 SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV 180 WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE 240 WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE 300 MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS 360 YNEGVGDETI KMQGFVQACS EHHLEEGQGI AGKALQSNHP FFFPDVKEYD ISEYPLVQHA 420 RKYGLNAAVA IRLRSTYTGD DDYILEFFLP VNMKGSTEQQ LLLNNLSSTM QRICRSLRTV 480 SDAELSGVGG SDIGFKRGLD ESRLPVELSR SCSEQKYVEG SSTPADQVSV NATDSSDARI 540 GARPPGQKVG GSRKQSEKKR STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ 600 HGISRWPSRK INKVNRSLKK IQTVLDSVQG VEGGLKFDPT TGGLVAAGSV IQDVDAQKSS 660 MVSNNNPCDR NIDLATEGAS PHPPPSSSCF NSENPTVKLE DESYMGVDKL RLSNSIPITT 720 SIGEYSSDSL KMAAAMPWTF STPSLKGCSR WSPIDGQLKV ETSNRHFVSQ SSSSLAAGDG 780 MDTGEDIIDE HNQSSSSGMT ESSNGSMMNG SSSSSPSFDG VKNPKAEMLF GDEGSKITVK 840 ATYKEDTVRF KYEPSSGWFQ LYEEVAKRFK IQTGTFQLKY KDDEEEWVLL VCESDWHECL 900 EILEFLGTRH VKFLVRDATF AMGSSGSSNC FLMGSS

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence

MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA  60
DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN  120
SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV  180
WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE  240
WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE  300
MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS  360
YNEGVGDETI KMQGFVQACS EHHLEEGQGI AGKALQSNHP FFFPDVKEYD ISEYPLVQHA  420
RKYGLNAAVA IRLRSTYTGD DDYILEFFLP VNMKGSTEQQ LLLNNLSSTM QRICRSLRTV  480
SDAELSGVGG SDIGFKRGLD ESRLPVELSR SCSEQKYVEG SSTPADQVSV NATDSSDARI  540
GARPPGQKVG GSRKQSEKKR STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ  600
HGISRWPSRK INKVNRSLKK IQTVLDSVQG VEGGLKFDPT TGGLVAAGSV IQDVDAQKSS  660
MVSNNNPCDR NIDLATEGAS PHPPPSSSCF NSENPTVKLE DESYMGVDKL RLSNSIPITT  720
SIGEYSSDSL KMAAAMPWTF STPSLKGCSR WSPIDGQLKV ETSNRHFVSQ SSSSLAAGDG  780
MDTGEDIIDE HNQSSSSGMT ESSNGSMMNG SSSSSPSFDG VKNPKAEMLF GDEGSKITVK  840
ATYKEDTVRF KYEPSSGWFQ LYEEVAKRFK IQTGTFQLKY KDDEEEWVLL VCESDWHECL  900
EILEFLGTRH VKFLVRDATF AMGSSGSSNC FLMGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	0.0	Nin-like family protein