PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995707.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 964aa MW: 105675 Da PI: 5.2984

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_024995707.1 591 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 642 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA 60 DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN 120 SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV 180 WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE 240 WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE 300 MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS 360 YNEGVGDETI KVRVGGCNVN SAEKCILCIE TDACYVNERE MQGFVQACSE HHLEEGQGIA 420 GKALQSNHPF FFPDVKEYDI SEYPLVQHAR KYGLNAAVAI RLRSTYTGDD DYILEFFLPV 480 NMKGSTEQQL LLNNLSSTMQ RICRSLRTVS DAELSGVGGS DIGFKRGLDE SRLPVELSRS 540 CSEQKYVEGS STPADQVSVN ATDSSDARIG ARPPGQVGGS RKQSEKKRST AEKNVSLSVL 600 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVLDSVQGVE 660 GGLKFDPTTG GLVAAGSVIQ DVDAQKSSMV SNNNPCDRNI DLATEGASPH PPPSSSCFNS 720 ENPTVKLEDE SYMGVDKLRL SNSIPITTSI GEYSSDSLKM AAAMPWTFST PSLKGCSRWS 780 PIDGQLKVET SNRHFVSQSS SSLAAGDGMD TGEDIIDEHN QSSSSGMTES SNGSMMNGSS 840 SSSPSFDGVK NPKAEMLFGD EGSKITVKAT YKEDTVRFKY EPSSGWFQLY EEVAKRFKIQ 900 TGTFQLKYKD DEEEWVLLVC ESDWHECLEI LEFLGTRHVK FLVRDATFAM GSSGSSNCFL 960 MGSS

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA  60
DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN  120
SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV  180
WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE  240
WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE  300
MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS  360
YNEGVGDETI KVRVGGCNVN SAEKCILCIE TDACYVNERE MQGFVQACSE HHLEEGQGIA  420
GKALQSNHPF FFPDVKEYDI SEYPLVQHAR KYGLNAAVAI RLRSTYTGDD DYILEFFLPV  480
NMKGSTEQQL LLNNLSSTMQ RICRSLRTVS DAELSGVGGS DIGFKRGLDE SRLPVELSRS  540
CSEQKYVEGS STPADQVSVN ATDSSDARIG ARPPGQVGGS RKQSEKKRST AEKNVSLSVL  600
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVLDSVQGVE  660
GGLKFDPTTG GLVAAGSVIQ DVDAQKSSMV SNNNPCDRNI DLATEGASPH PPPSSSCFNS  720
ENPTVKLEDE SYMGVDKLRL SNSIPITTSI GEYSSDSLKM AAAMPWTFST PSLKGCSRWS  780
PIDGQLKVET SNRHFVSQSS SSLAAGDGMD TGEDIIDEHN QSSSSGMTES SNGSMMNGSS  840
SSSPSFDGVK NPKAEMLFGD EGSKITVKAT YKEDTVRFKY EPSSGWFQLY EEVAKRFKIQ  900
TGTFQLKYKD DEEEWVLLVC ESDWHECLEI LEFLGTRHVK FLVRDATFAM GSSGSSNCFL  960
MGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	0.0	Nin-like family protein