PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995706.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 965aa MW: 105804 Da PI: 5.3667

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_024995706.1 592 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 643 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA 60 DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN 120 SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV 180 WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE 240 WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE 300 MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS 360 YNEGVGDETI KVRVGGCNVN SAEKCILCIE TDACYVNERE MQGFVQACSE HHLEEGQGIA 420 GKALQSNHPF FFPDVKEYDI SEYPLVQHAR KYGLNAAVAI RLRSTYTGDD DYILEFFLPV 480 NMKGSTEQQL LLNNLSSTMQ RICRSLRTVS DAELSGVGGS DIGFKRGLDE SRLPVELSRS 540 CSEQKYVEGS STPADQVSVN ATDSSDARIG ARPPGQKVGG SRKQSEKKRS TAEKNVSLSV 600 LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVNRSLKKI QTVLDSVQGV 660 EGGLKFDPTT GGLVAAGSVI QDVDAQKSSM VSNNNPCDRN IDLATEGASP HPPPSSSCFN 720 SENPTVKLED ESYMGVDKLR LSNSIPITTS IGEYSSDSLK MAAAMPWTFS TPSLKGCSRW 780 SPIDGQLKVE TSNRHFVSQS SSSLAAGDGM DTGEDIIDEH NQSSSSGMTE SSNGSMMNGS 840 SSSSPSFDGV KNPKAEMLFG DEGSKITVKA TYKEDTVRFK YEPSSGWFQL YEEVAKRFKI 900 QTGTFQLKYK DDEEEWVLLV CESDWHECLE ILEFLGTRHV KFLVRDATFA MGSSGSSNCF 960 LMGSS

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MEYPSPSKDK AMSFWASPRA QMDNSASFDG FTRPDDPFNG FSGLMNFDTY AGWCTSPSAA  60
DQMVTSFALS AGYTPFDYVN LTEQVKGGFL PTDGEVTQNF INGERAVLPT IDTQYSLPLN  120
SVDENDIGVG RGGNSCQQKN IQDTGNGIIH RPPVRSLAEK MLKALSLFKD SSGAGILAQV  180
WVPIKEGDKY ILSTSEQPYL LDQMLAGYRE VSRGFTFSAE VKPGNFPGLP GRVFTSKVPE  240
WTSNVAHYNK GEYLRIDHAR NHEVRGSIAL PVFEDDSFER SCCAVLELVT VKEKSDFSEE  300
MDHVCRALET VNLKSVTPPR LYKQCLSKNQ MAALGEITDV LRAVCHAHRL PVALTWIPCS  360
YNEGVGDETI KVRVGGCNVN SAEKCILCIE TDACYVNERE MQGFVQACSE HHLEEGQGIA  420
GKALQSNHPF FFPDVKEYDI SEYPLVQHAR KYGLNAAVAI RLRSTYTGDD DYILEFFLPV  480
NMKGSTEQQL LLNNLSSTMQ RICRSLRTVS DAELSGVGGS DIGFKRGLDE SRLPVELSRS  540
CSEQKYVEGS STPADQVSVN ATDSSDARIG ARPPGQKVGG SRKQSEKKRS TAEKNVSLSV  600
LQQYFSGSLK DAAKSIGVCP TTLKRICRQH GISRWPSRKI NKVNRSLKKI QTVLDSVQGV  660
EGGLKFDPTT GGLVAAGSVI QDVDAQKSSM VSNNNPCDRN IDLATEGASP HPPPSSSCFN  720
SENPTVKLED ESYMGVDKLR LSNSIPITTS IGEYSSDSLK MAAAMPWTFS TPSLKGCSRW  780
SPIDGQLKVE TSNRHFVSQS SSSLAAGDGM DTGEDIIDEH NQSSSSGMTE SSNGSMMNGS  840
SSSSPSFDGV KNPKAEMLFG DEGSKITVKA TYKEDTVRFK YEPSSGWFQL YEEVAKRFKI  900
QTGTFQLKYK DDEEEWVLLV CESDWHECLE ILEFLGTRHV KFLVRDATFA MGSSGSSNCF  960
LMGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	0.0	Nin-like family protein