PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995683.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 358aa MW: 39133.2 Da PI: 8.3396

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.2e-25	86	130	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_024995683.1 86 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 130 79****************************************986 PP
2	QLQ	61.3	2.7e-21	24	59	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+ Q+q+L++Q+l+yKyL+a++PvP +L+++i++ XP_024995683.1 24 PFTPVQWQELEHQALIYKYLVAGVPVPYDLVVPIRR 59 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSGSTTVAVA AAAAGSGISG YRPPFTPVQW QELEHQALIY KYLVAGVPVP YDLVVPIRRS 60 LEALSASFFN HPTSLGYCSY YGKKFDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG 120 RNRSRKPVES QSASQSLSTA VSLVTTVSST GSGNRSYQGL GSGSFQNSHL YPTASSGSFD 180 FGGNVSKLQM NANTYGINNS FRYNQGLTAD VDDRNYSSGA SASARGGLGM ESNADSSTWR 240 LVPNQVPTTS LMESRNDSYL HTKSPQLTMV NAFEPVIDAT TMSKPSQQHC LFGSKIGSPV 300 EVKHEQHSMR PFFDEWPEAR EPWSSLDPDS KNSFSTTQLS ISTAPEYTAR SDCTPNDG

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSGSTTVAVA AAAAGSGISG YRPPFTPVQW QELEHQALIY KYLVAGVPVP YDLVVPIRRS  60
LEALSASFFN HPTSLGYCSY YGKKFDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG  120
RNRSRKPVES QSASQSLSTA VSLVTTVSST GSGNRSYQGL GSGSFQNSHL YPTASSGSFD  180
FGGNVSKLQM NANTYGINNS FRYNQGLTAD VDDRNYSSGA SASARGGLGM ESNADSSTWR  240
LVPNQVPTTS LMESRNDSYL HTKSPQLTMV NAFEPVIDAT TMSKPSQQHC LFGSKIGSPV  300
EVKHEQHSMR PFFDEWPEAR EPWSSLDPDS KNSFSTTQLS ISTAPEYTAR SDCTPNDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-48	GRF family protein