PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995599.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 350aa    MW: 39471.1 Da    PI: 7.1985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_024995599.1 14 KGPWTSEEDQKLLAYIQEYGYGSWRALPSKAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.46.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
   XP_024995599.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MGRSPCCDKI GLKKGPWTSE EDQKLLAYIQ EYGYGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLIKMG  120
IDPVNHKPKN DTLLSNDGHT KSHANLSHMA QWESARLEAE ARLAKQSKIR SMTQLPNKIM  180
LSLASTSKPP PRYLDIQKTL NGILDRRGDS ESSSFTSTTR FNGGTTGFNC GNNSMGSCNE  240
ELVCEGCEEV GDYKDDENGM GFNEFSIDNI WTTEPLKSSN NNQDVNFLEH FTELLLSSSN  300
FTKFDHLDTG FGCNGPTENS KDCSEDKNKD YWDNILNLAN SSSSDSLIDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-96MYB family protein