PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 24090 Da PI: 7.1449 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.7 | 1.3e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda+++l+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l XP_024995559.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNTLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLT 102 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_024995559.1 103 SAKSE 107 99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ 60 REDAVNTLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LTSAKSELSK YQNHHLCHMN 120 DASTHGVLIS PAAAATNHHH HHHDMGMINL IGGGDEVISE ERLYQQHAEF FPHTAAIRGF 180 DVKCSYDGVG QHMQYQQHRA AGSAGSDDRR TPIDPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 3e-75 | LBD family protein |