PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995523.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 828aa    MW: 90684.2 Da    PI: 5.1288
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-2184139156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_024995523.1  84 KKRYHRHTAHQIQEMEALFKECPHPDDKRRMRLSQELGLKPRQVKFWFQNRRTQMK 139
                     688999***********************************************998 PP
2START149.82.4e-472875122206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     +a++ ++e+vk+   +ep+W+++   + g+evl  +e +k               ++ea+r s vv+ ++ +lv  +ld   +W e ++    +a
  XP_024995523.1 287 FALSFMDEVVKMCRFGEPLWTRVN--DAGKEVLNFEEHAKMfpclinrktdlneLRYEASRSSSVVIINSITLVDAFLDAD-KWMELFPsiisRA 378
                     577889******************..999999999988888999999**********************************.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     +tl+vi+sg      g l+lm+aelq+lsplvp R+  f+Ry+ q  ++g+w+i d  +ds  +   ++s+ R +++pSg++i++++ng+s+vtw
  XP_024995523.1 379 KTLQVITSGvngnanGSLHLMYAELQMLSPLVPtREIHFLRYCAQnGEDGTWAITDFPLDSFHDTY-QPSLTRYKRRPSGCIIQDMPNGYSRVTW 472
                     *********************************************999*************99988.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh++ ++  +h ++   v+sg+a+gak+w+a lqrqce+
  XP_024995523.1 473 VEHAEAEDEPVHGIFADYVSSGMAFGAKRWLAVLQRQCER 512
                     **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    
MFGDCQVMSS MGGGSGISSE SIFPNFNFMP FTDFSSIIPK EEMESMVRSG KEEMDSGGSG  60
SDQIEGGLSG NDQDADQQQP PAKKKRYHRH TAHQIQEMEA LFKECPHPDD KRRMRLSQEL  120
GLKPRQVKFW FQNRRTQMKA QQDRADNAVL RNDNENLRIE NSRLQNALHA LVCSNCGGST  180
MSFDEQQLRM ENARLKEELD RVCLIASQFC GSDPLQTQGQ GPLPSLMTSN QLDLDMNMYP  240
RPNDQEGMPN CSEMMQMNPL MAPEGPNFAA ANGLIIMDDE KPLAIQFALS FMDEVVKMCR  300
FGEPLWTRVN DAGKEVLNFE EHAKMFPCLI NRKTDLNELR YEASRSSSVV IINSITLVDA  360
FLDADKWMEL FPSIISRAKT LQVITSGVNG NANGSLHLMY AELQMLSPLV PTREIHFLRY  420
CAQNGEDGTW AITDFPLDSF HDTYQPSLTR YKRRPSGCII QDMPNGYSRV TWVEHAEAED  480
EPVHGIFADY VSSGMAFGAK RWLAVLQRQC ERLASLMARN ISDIGAIPSP EARKNLMNLA  540
QRMVRMFCLN ITGSCGQSWT ALSDSMEDTV RITTRKVTEP GQPHGLILTA VSTTWLPHPH  600
YQVFDLLRDE RRRSQLDVLS NGNPLQEVAH IANGSHPGNC ISLLRVNVAS NSSQNVELVL  660
QESFTDDSGS LVAYSIVDVD AIKLTMNGED PSCIPLLPLG FVIVPAGQNP AGNLSSTSAT  720
TSIGNTTESG GGCLLTVGLQ VLANALPTAK LNLSSANTVN NHIQSTVHQI IAALGGVAGN  780
NGIGGGGGGG GHSGSQCADD GDNGGGFDEQ PTTRPPKKVD SSPTSKVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein