PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995520.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 353aa MW: 38821.9 Da PI: 7.7662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	145	191	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq XP_024995520.1 145 VHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 191 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MPSLLYKMAN MCDIPATCSS SSPPATTDDI SLFLRQILLK SSSSSSSWPS FATKQLQCEI 60 PPLQPVYSSG LPVPDRIPTF STSSGAYLPA NAVAYVSSSS VGTIDNDPDE YDCESEEGFE 120 NLMEEMAEKS NPPRNPSKRT RAAEVHNLSE KRRRSRINEK MKALQKLIPN SNKTDKASML 180 DEAIEYLKQL QLRVQMLTMR NGINLCSMSV PSGVIQPRQL PRSRIGLNEG NKPADMAPLN 240 QEMHMNPMIS LPMHCSNQSQ PSIPDFSHII NPGPSSRHES SFGTQHGSFG FPNPPTEFCR 300 EGVFSCHRTD INSNESNSLV SQMGGKAKAS SHSAKNLRGF SSTNEFTPGV MRM

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MPSLLYKMAN MCDIPATCSS SSPPATTDDI SLFLRQILLK SSSSSSSWPS FATKQLQCEI  60
PPLQPVYSSG LPVPDRIPTF STSSGAYLPA NAVAYVSSSS VGTIDNDPDE YDCESEEGFE  120
NLMEEMAEKS NPPRNPSKRT RAAEVHNLSE KRRRSRINEK MKALQKLIPN SNKTDKASML  180
DEAIEYLKQL QLRVQMLTMR NGINLCSMSV PSGVIQPRQL PRSRIGLNEG NKPADMAPLN  240
QEMHMNPMIS LPMHCSNQSQ PSIPDFSHII NPGPSSRHES SFGTQHGSFG FPNPPTEFCR  300
EGVFSCHRTD INSNESNSLV SQMGGKAKAS SHSAKNLRGF SSTNEFTPGV MRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	9e-45	bHLH family protein