PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27988.8 Da PI: 8.4616 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_024995477.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 96.9 | 3.2e-32 | 81 | 173 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++s++ea + s+qqe+ kLk ++e Lqr+qR+llGedL++L+ keL++Le+qL++slk+iRs +++l+l+ + +lqkke++l+e+n++L+++l XP_024995477.1 81 NVSAKEALELSSQQEYLKLKTRYEALQRSQRNLLGEDLGPLNCKELESLERQLDSSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRL 173 555677777899******************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPES NVSAKEALEL SSQQEYLKLK TRYEALQRSQ RNLLGEDLGP 120 LNCKELESLE RQLDSSLKHI RSARTQLMLD TLTDLQKKEH ALNEANRTLK QRLIEGNQVH 180 WYQQQEVCYD NRQPAPPHQT DHEAIFHPLD CGPTLQMGYQ TDPLTAAGGG AGPSMNNYMQ 240 GWLPC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-112 | MIKC_MADS family protein |