PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 477aa MW: 53316.9 Da PI: 9.2583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.7e-16 | 55 | 98 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd l +vk++ g++Wk+Ia+ ++ gR++ qc +rwqk+l XP_024995473.1 55 WTDEEDTMLTGVVKKYNGRNWKKIAESIP-GRSDVQCLHRWQKVL 98 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60 | 5.2e-19 | 104 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W++Ia+++ gR +kqc++rw+++l XP_024995473.1 104 KGPWTKEEDDRIKELVEKHGCKKWSLIAKHLA-GRIGKQCRERWHNHL 150 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.1 | 3.7e-17 | 156 | 199 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT+eE+ l+ +++ +G++ W+ Iar ++ gRt++ +k++w++ XP_024995473.1 156 KEAWTEEEESTLAYYHQIYGNR-WAEIARFLP-GRTDNAIKNHWNS 199 579*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence |
MAGGKEEPHT FDLKKEVGFS SCSSISDSSC DANTPRSHYN RGSSCQTKRS SQAGWTDEED 60 TMLTGVVKKY NGRNWKKIAE SIPGRSDVQC LHRWQKVLNP ELVKGPWTKE EDDRIKELVE 120 KHGCKKWSLI AKHLAGRIGK QCRERWHNHL DPAIRKEAWT EEEESTLAYY HQIYGNRWAE 180 IARFLPGRTD NAIKNHWNSS KRRLDLNIPP VFPRRTSSPE HTEVKKGGTG TPLVEQNADD 240 KKLLNVSNTC STNLALGNRK FDITDEDCMG FTRYAKIRKV EPSIPESPKR LAVDSVKDLK 300 LGISPDTSFL SLSTFGTPSY GSLCYQPPQL KNLAISLENS GSPSSANSSM QLNGQFSCST 360 PPHLALSISV NSSSPESILR NSAMSYKNTP SIIRKRTPRS VNCSSPSTSG HDCSKNVKTS 420 ESEITQRGPD SWLHRSQPSL GRRLDYMFDS EWDPTIVRCC TPGSVTRSPK ANVMLTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-79 | MYB family protein |