PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024995438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | B3 | ||||||||
Protein Properties | Length: 418aa MW: 46095.3 Da PI: 7.2112 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.2 | 1.1e-30 | 42 | 144 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g + XP_024995438.1 42 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSTNDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGGsAK 136 89***************************9555568889************************************************54444466 PP E..EEEEE CS B3 90 felvvkvf 97 +l++ ++ XP_024995438.1 137 DRLFIDWR 144 66777666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence |
MMLDYSSVSV TPASGNNNDD DQQSSPQAAG GMMMVVEREH MFDKVVTPSD VGKLNRLVIP 60 KQHAERYFPL DSSTNDKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD 120 AGDIVSFQRG VGGSAKDRLF IDWRHRPDAP TPPYQLSSNL SFPLPHHQFS FPTRNSAGMN 180 IHPWNPLFLQ SQPAPSRSHS NLMLQSPNSY VPSSYRYGST GGPYHNIGTG SVVNVNQGGS 240 GSVIYFRSGG GGIPQQQQVD MMQMQQRSGV GIDPPALPAP PPPPPAVVFE SVPVVHGKAA 300 AKRLRLFGVN MDCPISDDDD QDYDPAIELS PTTASASTTT NPIPMGHYNH ANYHHDHFPP 360 HHHPPPQSSS TIPYLQLRPY GGETQFHQST MVSSSSTDAL NKTSKSSSSD HMSLDLDM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 5e-72 | B3 family protein |