PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995385.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 658aa    MW: 72444.2 Da    PI: 5.5813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.17.5e-902936574374
            GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 
                      L+++Ae + sg+++ aq +Larl+++  s  +  +p++R  +yf+eAL+ ++a   s++  +   +    s++n   ++ a+k++sevsPi++f
  XP_024995385.1 293 PLYAAAELMLSGNFSHAQGILARLNHQlPSAMApyKPIERSGFYFKEALQMQMAFLISKCNPTSlpRRVVPSPSNGMFKMCAYKVLSEVSPIIQF 387
                     5999**********************9744443479****************999777776655222333455679999**************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      ++t Nqa+lea++ ++ +HiiDfdi+ G+QW++++q+L  R+   +g  sl+iT+++sp++++  el  ++e+L++fA+e+g++fe +v+   +
  XP_024995385.1 388 MNFTSNQALLEALDDADNIHIIDFDIGFGAQWASFIQELPRRTntnGGGCSLKITAFASPSTHHPVELGLMHENLSQFAQEIGISFELEVV---N 479
                     ******************************************98867788****************************************8...9 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                     +++++++++ v+ + a+ Vn+ +   +++   ++    ++++L+++k+lsPk+vv  ++ +++++ +F + ++e l+yy al++s+ +a++   s
  XP_024995385.1 480 FDSFDPNSFLVSGKAAVGVNFPIWSTSTH--LAA----IPSLLHFIKQLSPKIVVSLDRGCERTDLTFPQYLMEGLQYYEALLESIgAANI--PS 566
                     **********************9766665..333....567*********************************************66665..78 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +++k+E++ll+++i+++v+ + +      e +++W+  +++ G+ +v ls++a++qa++++++ +++g+ ve+++gslvl+Wk+r+L++vSaW+
  XP_024995385.1 567 YTANKIEKFLLQPQIESMVMGKVEF----PEPMAHWKTLFTAGGYLAVGLSNFAEAQADCVVKRSEVRGFDVEKRHGSLVLCWKKRELMAVSAWK 657
                     999****************987665....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MAHEVAVFPP SIDSKEGSFG SNNSNEPISV LDTRRSPSPS TSISNLSSSF GGGAANNNAA  60
TVGVSDNNIQ QNWPEYSVPL EMGVSGSLAN LATIAGGCRK DEWSELQPIS AEFEPQQKRF  120
GVGLDDWERL LSESGGSQVQ DQDQSLLRWI SGDVDDTSFS LKQLLQGNQI DENAPPTTVF  180
KSSSPPQLPS FFPFLYPGQN PQNFNSQMIV NPPSQQPQPP PPPLEIQFHQ SSLQKPPAFD  240
QSHEFLLKKQ NQLLSLHQQR SMMAVVAKQE PLSPPGAAPP PPHYHQKQLI CDPLYAAAEL  300
MLSGNFSHAQ GILARLNHQL PSAMAPYKPI ERSGFYFKEA LQMQMAFLIS KCNPTSLPRR  360
VVPSPSNGMF KMCAYKVLSE VSPIIQFMNF TSNQALLEAL DDADNIHIID FDIGFGAQWA  420
SFIQELPRRT NTNGGGCSLK ITAFASPSTH HPVELGLMHE NLSQFAQEIG ISFELEVVNF  480
DSFDPNSFLV SGKAAVGVNF PIWSTSTHLA AIPSLLHFIK QLSPKIVVSL DRGCERTDLT  540
FPQYLMEGLQ YYEALLESIG AANIPSYTAN KIEKFLLQPQ IESMVMGKVE FPEPMAHWKT  600
LFTAGGYLAV GLSNFAEAQA DCVVKRSEVR GFDVEKRHGS LVLCWKKREL MAVSAWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-102GRAS family protein